Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016895.1 Corchorus olitorius cultivar O-4 contig16928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29622

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2678--2724
14
3.4
14
76
5
51
29
6
2
61
1.32
6525--6555
8
3.8
8
95
4
53
58
0
3
38
1.15
6747--6771
2
12.5
2
100
0
50
48
0
0
52
1.00
11794--11846
26
2.0
26
100
0
106
7
35
11
45
1.69
13121--13716
22
26.8
22
69
10
212
37
8
17
36
1.81
13229--13687
44
10.3
44
74
10
281
38
9
16
35
1.81
13121--13705
66
8.8
64
73
10
295
37
8
16
36
1.80
13315--13643
67
4.9
67
77
8
215
37
10
17
34
1.83
13315--13643
89
3.7
88
76
7
234
37
10
17
34
1.83
13731--13798
22
3.1
21
72
8
55
45
7
13
33
1.71
13859--13944
22
3.9
22
78
3
75
38
9
16
36
1.81
16611--16649
16
2.4
16
87
8
53
64
12
7
15
1.49
19908--19980
21
3.4
21
75
1
65
15
19
46
19
1.84
20891--20948
24
2.4
24
100
0
116
34
25
15
24
1.95
23136--23187
25
2.2
24
86
13
72
30
11
15
42
1.82
23229--23323
48
1.9
50
85
8
133
52
15
6
25
1.66
23647--23686
15
2.6
16
88
4
55
62
12
10
15
1.54
27437--27711
111
2.5
110
86
7
389
39
13
9
36
1.78
28548--28620
39
1.9
39
89
10
116
16
39
41
2
1.63
28588--28664
24
3.3
24
85
5
106
19
40
38
1
1.60
28747--28778
15
2.2
15
94
5
57
84
0
15
0
0.63
28739--28782
11
3.7
11
80
14
52
81
0
18
0
0.68

Tables:   1

The End!