Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016896.1 Corchorus olitorius cultivar O-4 contig16929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43274

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
993--1168
85
2.1
86
91
3
284
32
14
2
51
1.55
1291--1324
14
2.4
14
90
5
50
44
0
0
55
0.99
1284--1329
15
2.9
16
78
12
51
43
0
0
56
0.99
5095--5121
11
2.5
11
100
0
54
48
0
7
44
1.31
10056--10081
2
13.0
2
100
0
52
50
0
0
50
1.00
22008--22038
15
2.1
15
100
0
62
35
0
32
32
1.58
26092--26149
22
2.4
25
88
8
86
34
18
13
32
1.91
26456--26905
178
2.5
179
81
3
505
33
16
14
34
1.90
27029--27073
23
1.9
24
86
4
65
62
13
13
11
1.55
27029--27090
23
2.6
23
80
10
63
59
11
16
12
1.61
36587--36620
16
2.2
16
89
5
52
61
11
11
14
1.56
41588--41630
22
2.0
22
86
9
61
18
27
13
39
1.89
41686--41789
51
2.0
51
81
7
122
21
25
13
40
1.89
42787--42847
29
2.0
30
84
6
79
32
8
19
39
1.81

Tables:   1

The End!