Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016899.1 Corchorus olitorius cultivar O-4 contig16932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56671

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6496--6540
12
3.6
13
85
8
58
40
6
8
44
1.62
11795--11828
17
2.0
17
100
0
68
29
11
5
52
1.61
26710--26756
14
3.5
13
80
11
51
78
14
2
4
0.99
26710--26756
20
2.3
20
85
7
60
78
14
2
4
0.99
26714--26756
6
6.7
6
82
12
50
79
13
2
4
1.00
31332--31414
42
2.0
43
88
7
125
22
19
22
34
1.96
31402--31441
20
2.0
20
90
0
62
37
20
20
22
1.94
31902--31932
12
2.6
12
100
0
62
51
32
16
0
1.44
38156--38184
13
2.2
13
100
0
58
37
27
13
20
1.91
39625--39680
3
18.7
3
96
0
103
64
0
1
33
1.04
39807--39844
2
19.0
2
94
0
67
52
0
0
47
1.00
41296--41358
25
2.5
26
94
2
110
46
3
6
44
1.45
46958--46982
3
8.3
3
100
0
50
64
0
36
0
0.94
47441--48120
162
4.2
162
93
0
1146
26
23
19
30
1.98
49798--49860
15
4.5
15
67
18
55
12
31
30
25
1.93
49799--49925
40
3.2
40
89
0
191
14
33
27
23
1.94
55438--55497
27
2.2
27
84
3
75
35
10
21
33
1.87

Tables:   1

The End!