Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001690.1 Corchorus olitorius cultivar O-4 contig01690, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 879

Length: 1465
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:64 original size:2 final size:2

Alignment explanation


    Indices: 57--94  Score: 76
    Period size: 2  Copynumber: 19.0  Consensus size: 2

         47 GCTAAAACTA

                                                                    
         57 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

         95 TAAATAAAGG


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.