Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016901.1 Corchorus olitorius cultivar O-4 contig16934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54808

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
410--491
31
2.6
31
90
0
128
41
9
12
36
1.76
621--686
31
2.2
31
86
5
91
24
19
10
45
1.82
1331--1502
31
5.6
31
82
1
150
37
27
20
14
1.91
1334--1510
93
1.9
91
83
2
228
37
28
20
14
1.91
3113--3373
136
2.0
123
85
11
344
49
1
11
37
1.48
4089--4163
35
2.1
35
92
0
123
22
16
17
44
1.87
4205--4236
16
2.0
16
100
0
64
50
0
0
50
1.00
4295--4323
9
3.3
9
90
9
51
51
0
0
48
1.00
4451--4552
35
2.6
39
79
16
122
35
23
19
21
1.96
4478--4570
35
2.7
35
94
3
161
40
22
15
21
1.90
4673--4726
16
3.4
15
77
10
54
7
12
33
46
1.70
12238--12271
5
6.8
5
100
0
68
82
0
0
17
0.67
17958--17988
2
15.5
2
100
0
62
51
0
0
48
1.00
31902--31939
2
19.0
2
94
0
67
47
0
0
52
1.00
32195--32318
33
3.8
33
96
0
221
8
41
40
9
1.69
34286--34591
149
2.1
149
88
1
452
31
25
20
22
1.98
39087--39125
20
2.0
20
89
0
60
43
0
46
10
1.37

Tables:   1

The End!