Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016902.1 Corchorus olitorius cultivar O-4 contig16935, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50073

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115--166
23
2.3
22
83
12
61
17
13
0
69
1.19
8825--8853
10
2.9
10
100
0
58
0
58
0
41
0.98
25094--25120
2
13.5
2
100
0
54
0
0
48
51
1.00
26364--26506
72
2.0
72
92
0
241
29
13
17
39
1.89
29335--29393
27
2.2
27
100
0
118
40
16
5
37
1.71
38413--38438
11
2.4
11
100
0
52
38
7
19
34
1.80
38481--38600
22
5.5
22
74
11
95
36
10
9
43
1.72
38568--38660
21
4.5
21
77
9
84
30
13
8
47
1.73
38603--38682
21
3.9
21
76
12
67
25
16
7
51
1.70
38718--38810
42
2.2
42
96
0
168
33
25
16
24
1.96
38809--38882
36
2.1
36
97
0
139
37
14
14
32
1.87
38956--39025
35
2.0
35
94
0
122
35
35
5
22
1.78
39239--40013
385
2.0
385
96
1
1435
42
16
10
31
1.81
40012--40097
45
1.9
45
92
0
145
34
12
9
43
1.75
41396--41468
22
3.5
22
64
17
55
42
10
13
32
1.79
42889--42997
3
36.0
3
98
1
209
33
0
0
66
0.92
45138--45240
51
2.0
50
81
9
120
21
19
13
45
1.84
47719--47758
21
1.9
21
84
0
53
12
37
22
27
1.90

Tables:   1

The End!