Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016903.1 Corchorus olitorius cultivar O-4 contig16936, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25530

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
461--559
51
1.9
51
80
11
114
22
19
14
44
1.86
936--986
22
2.3
23
80
10
61
47
9
17
25
1.78
944--997
22
2.5
22
84
3
65
42
9
24
24
1.83
1018--1142
22
5.8
21
78
9
110
38
9
12
40
1.75
1040--1142
43
2.4
44
85
4
138
39
10
11
37
1.77
9425--9454
2
15.0
2
92
0
51
53
0
0
46
1.00
9836--10172
178
1.9
178
85
3
473
36
16
13
34
1.87
9836--10213
178
2.1
177
82
4
456
37
15
13
33
1.87
10440--10702
131
2.0
131
98
0
508
39
7
11
41
1.70
13102--13144
2
21.5
2
100
0
86
48
0
0
51
1.00
19204--19245
15
2.7
15
96
3
75
66
14
7
11
1.43
21222--21255
12
2.9
12
86
4
52
55
0
2
41
1.15

Tables:   1

The End!