Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016905.1 Corchorus olitorius cultivar O-4 contig16938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109644

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1183--1243
7
9.1
7
89
10
101
57
0
0
42
0.98
1481--1514
2
17.0
2
100
0
68
50
0
0
50
1.00
10801--10839
20
2.0
20
89
0
60
46
0
43
10
1.37
38103--38136
3
11.3
3
93
0
50
0
38
0
61
0.96
44074--44140
30
2.3
30
97
2
127
23
2
31
41
1.70
44810--44920
55
2.0
55
98
0
213
38
19
9
32
1.83
56226--56261
18
2.0
18
88
0
54
36
11
38
13
1.81
68974--69041
21
3.2
21
64
15
59
50
14
5
29
1.67
68961--69040
42
1.9
42
97
0
151
47
15
7
30
1.72
69107--69221
57
2.0
57
94
1
205
40
1
22
34
1.64
73204--73232
12
2.5
12
94
5
51
34
6
0
58
1.25
96563--96603
21
2.0
21
90
0
64
24
12
17
46
1.82
97300--97394
33
2.9
33
98
0
181
33
26
21
18
1.96
99574--99642
27
2.6
27
88
6
97
43
4
44
7
1.51
99600--99814
86
2.5
85
95
2
376
27
5
44
22
1.74
99779--99840
14
4.6
14
75
13
58
40
3
50
6
1.44
99792--99838
13
3.5
13
75
16
51
42
2
48
6
1.40
99773--99840
27
2.6
27
92
2
111
42
2
47
7
1.46

Tables:   1

The End!