Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016907.1 Corchorus olitorius cultivar O-4 contig16940, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52026

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17456--17484
2
14.5
2
100
0
58
48
0
0
51
1.00
22789--23476
30
23.2
30
88
5
897
30
17
19
32
1.95
22885--23476
301
2.0
293
89
4
911
29
18
20
31
1.96
27154--27189
17
2.1
17
89
0
54
38
19
11
30
1.86
32401--32661
106
2.5
104
87
2
371
42
9
7
39
1.66
33414--33473
32
1.9
31
86
6
86
26
11
40
21
1.88
34717--34762
4
11.5
4
100
0
92
0
0
23
76
0.79
38192--38260
34
2.0
34
97
0
129
40
27
8
23
1.84
38700--38744
21
2.1
21
87
0
63
31
11
22
35
1.89
40657--40739
22
3.8
21
76
17
73
59
1
1
38
1.13
40659--40709
25
2.0
25
85
7
68
60
0
0
39
0.97

Tables:   1

The End!