Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016909.1 Corchorus olitorius cultivar O-4 contig16942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51020

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1517--1543
14
1.9
14
100
0
54
14
14
14
55
1.70
3484--3543
14
4.4
14
74
17
54
56
0
1
41
1.09
3651--3700
25
1.9
27
84
15
70
46
2
0
52
1.12
10094--10129
18
2.1
18
89
5
56
38
11
5
44
1.63
11078--11132
21
2.7
20
83
8
65
18
20
45
16
1.86
11320--11367
21
2.3
21
85
0
60
8
29
54
8
1.60
12964--13016
12
4.4
13
81
11
60
45
9
5
39
1.60
13189--13230
19
2.2
19
86
0
57
59
21
7
11
1.56
14200--14256
6
9.5
6
90
7
80
0
28
0
71
0.86
14195--14259
23
2.8
23
88
9
96
0
27
0
72
0.85
14201--14269
30
2.4
28
88
7
95
0
31
0
68
0.90
18796--18853
21
2.8
21
94
0
98
18
48
22
10
1.78
18800--18866
21
3.2
21
83
8
82
20
47
22
8
1.78
19437--19469
16
2.1
16
100
0
66
39
18
6
36
1.75
28725--28754
15
1.9
16
93
6
53
60
10
10
20
1.57
31230--31271
21
2.0
21
85
0
57
50
7
21
21
1.72
39919--39961
22
2.0
22
86
9
61
27
2
16
53
1.55
40063--40210
38
3.9
38
90
1
226
23
18
35
22
1.96
40240--40277
6
6.3
6
93
0
67
15
2
34
47
1.60
43612--43714
39
2.7
39
86
1
154
27
19
33
20
1.97
43751--43806
6
9.3
6
100
0
112
16
0
33
50
1.45
47183--48373
596
2.0
593
97
0
2247
26
20
19
33
1.96

Tables:   1

The End!