Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016910.1 Corchorus olitorius cultivar O-4 contig16943, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7065
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34


Found at i:1386 original size:21 final size:21

Alignment explanation


    Indices: 1357--1396  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1347 CAGACATGCA

                                 
       1357 ACTTCTTCAGTGAGAGATTCT
          1 ACTTCTTCAGTGAGAGATTCT

                *         *    
       1378 ACTTGTTCAGTGAGTGATT
          1 ACTTCTTCAGTGAGAGATT

       1397 GCACCTTTTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40


Consensus pattern (21 bp):   
ACTTCTTCAGTGAGAGATTCT
Done.