Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016911.1 Corchorus olitorius cultivar O-4 contig16944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18332
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:17433 original size:15 final size:15

Alignment explanation


    Indices: 17413--17441  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

      17403 TATTTCGTCA

                           
      17413 TATATATCATCCCCG
          1 TATATATCATCCCCG

                          
      17428 TATATATCATCCCC
          1 TATATATCATCCCC

      17442 AACATCATCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.28, C:0.34, G:0.03, T:0.34


Consensus pattern (15 bp):   
TATATATCATCCCCG
Done.