Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016912.1 Corchorus olitorius cultivar O-4 contig16945, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11982
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30


Found at i:1869 original size:20 final size:21

Alignment explanation


    Indices: 1836--1874  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       1826 TTTCCTTGCT

                     *           
       1836 TTTCTTTTTTCTTTTCTTTTA
          1 TTTCTTTTTACTTTTCTTTTA

                               
       1857 TTTC-TTTTACTTTTCTTT
          1 TTTCTTTTTACTTTTCTTT

       1875 AAAATTGGGC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20   13  0.76
  21    4  0.24

ACGTcount: A:0.05, C:0.15, G:0.00, T:0.79


Consensus pattern (21 bp):   
TTTCTTTTTACTTTTCTTTTA
Done.