Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016914.1 Corchorus olitorius cultivar O-4 contig16947, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7221
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32


Found at i:2828 original size:10 final size:10

Alignment explanation


    Indices: 2807--2835  Score: 51
    Period size: 10  Copynumber: 3.0  Consensus size: 10

       2797 TTAAAAAAGG

                      
       2807 AAATAAAA-T
          1 AAATAAAATT

                      
       2816 AAATAAAATT
          1 AAATAAAATT

                      
       2826 AAATAAAATT
          1 AAATAAAATT

       2836 GTTAATATGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
   9    8  0.42
  10   11  0.58

ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28


Consensus pattern (10 bp):   
AAATAAAATT
Done.