Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016916.1 Corchorus olitorius cultivar O-4 contig16949, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106059
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:8583 original size:2 final size:2
Alignment explanation
Indices: 8576--8619 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
8566 TTGTGCATAG
8576 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8618 TA
1 TA
8620 CACATACCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14849 original size:42 final size:42
Alignment explanation
Indices: 14659--14931 Score: 205
Period size: 44 Copynumber: 6.3 Consensus size: 42
14649 GAAAACCTCC
* * * *
14659 CTATGAAATTTTAATAACCTTCCAATG-AATTTTGGTAACCAT
1 CTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAACC-T
* * * * *
14701 ATTATTAAA-TTTGATAACCCTTCCTATGAAATTTTTG-CAACCAAA
1 -CTATGAAATTTTGATAA-CCTCCCTATGAAA-TTTTGATAACC--T
* * ** *
14746 CTATGAAATTTTGGTAACCGCAATATGAAATTGTGATAATAACCT
1 CTATGAAATTTTGATAACCTCCCTATGAAATT-T--TGATAACCT
14791 -TATGAAATTTTGATAACCTCCCTATGAAATTTTGATAACCGT
1 CTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAACC-T
* * * *
14833 -TATGAAATTTCGATAACCACCCTATAAAATTTCGATAATCGCT
1 CTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAA-C-CT
* * *
14876 CTATGAAATTTTGATAACTTCCTTATGAAATTTTGTTAACCT
1 CTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAACCT
14918 CTATGATAATTTTG
1 CTATGA-AATTTTG
14932 TCAATCTTAA
Statistics
Matches: 184, Mismatches: 32, Indels: 28
0.75 0.13 0.11
Matches are distributed among these distances:
41 7 0.04
42 50 0.27
43 28 0.15
44 81 0.44
45 13 0.07
46 1 0.01
47 4 0.02
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (42 bp):
CTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAACCT
Found at i:14865 original size:22 final size:21
Alignment explanation
Indices: 14652--14931 Score: 138
Period size: 22 Copynumber: 12.9 Consensus size: 21
14642 AGAACCCGAA
*
14652 AACCTCCCTATGAAATTTTAAT
1 AACC-CCCTATGAAATTTTGAT
* * *
14674 AACCTTCCAATG-AATTTTGGT
1 AACC-CCCTATGAAATTTTGAT
*** *
14695 AACCATATTATTAAA-TTTGAT
1 AACC-CCCTATGAAATTTTGAT
*
14716 AACCCTTCCTATGAAATTTTTG-C
1 AACCC--CCTATGAAA-TTTTGAT
** *
14739 AACCAAACTATGAAATTTTGGT
1 AACC-CCCTATGAAATTTTGAT
** *
14761 AACCGCAATATGAAATTGTGAT
1 AACC-CCCTATGAAATTTTGAT
** *
14783 AATAACCTTATGAAATTTTGAT
1 AA-CCCCCTATGAAATTTTGAT
14805 AACCTCCCTATGAAATTTTGAT
1 AACC-CCCTATGAAATTTTGAT
** *
14827 AA-CCGTTATGAAATTTCGAT
1 AACCCCCTATGAAATTTTGAT
* *
14847 AACCACCCTATAAAATTTCGAT
1 AACC-CCCTATGAAATTTTGAT
* *
14869 AATCGCTCTATGAAATTTTGAT
1 AA-CCCCCTATGAAATTTTGAT
* * *
14891 AACTTCCTTATGAAATTTTGTT
1 AAC-CCCCTATGAAATTTTGAT
*
14913 AA-CCTCTATGATAATTTTG
1 AACCCCCTATGA-AATTTTG
14932 TCAATCTTAA
Statistics
Matches: 196, Mismatches: 48, Indels: 29
0.72 0.18 0.11
Matches are distributed among these distances:
20 22 0.11
21 38 0.19
22 127 0.65
23 5 0.03
24 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (21 bp):
AACCCCCTATGAAATTTTGAT
Found at i:25949 original size:7 final size:7
Alignment explanation
Indices: 25935--26333 Score: 521
Period size: 7 Copynumber: 56.4 Consensus size: 7
25925 TTTTGAGCCA
25935 TGAATTT
1 TGAATTT
*
25942 TGAGTTT
1 TGAATTT
*
25949 TGAGTTT
1 TGAATTT
*
25956 TGAGTTT
1 TGAATTT
*
25963 TGAGTTT
1 TGAATTT
*
25970 TGAGTTT
1 TGAATTT
*
25977 TGAGTTT
1 TGAATTT
*
25984 TGAGTTT
1 TGAATTT
*
25991 TGAGTTT
1 TGAATTT
*
25998 TGAGTTT
1 TGAATTT
*
26005 TGAGTTT
1 TGAATTT
*
26012 TGAGTTT
1 TGAATTT
*
26019 TGAGTTT
1 TGAATTT
26026 T-AAGTTT
1 TGAA-TTT
*
26033 TGAGTTT
1 TGAATTT
*
26040 TGAGTTT
1 TGAATTT
*
26047 TGAGTTT
1 TGAATTT
*
26054 TGAGTTT
1 TGAATTT
*
26061 TGAGTTT
1 TGAATTT
*
26068 TGAGTTT
1 TGAATTT
*
26075 TGAGTTT
1 TGAATTT
*
26082 TGAGTTT
1 TGAATTT
*
26089 TGAGTTT
1 TGAATTT
*
26096 TGAGTTT
1 TGAATTT
*
26103 TGAGTTT
1 TGAATTT
26110 TGAATTT
1 TGAATTT
*
26117 TGAGTTT
1 TGAATTT
26124 TGAATTT
1 TGAATTT
26131 TGAATTT
1 TGAATTT
26138 TGAATTT
1 TGAATTT
26145 TGAATTT
1 TGAATTT
26152 TGAATTT
1 TGAATTT
26159 TGAATTT
1 TGAATTT
26166 TGAATTT
1 TGAATTT
26173 TGAATTT
1 TGAATTT
26180 TGAATTT
1 TGAATTT
26187 TGAATTT
1 TGAATTT
26194 TGAATTT
1 TGAATTT
26201 TGAATTT
1 TGAATTT
26208 TGAATTT
1 TGAATTT
26215 TGAATTT
1 TGAATTT
26222 TGAATTT
1 TGAATTT
26229 TGAATTT
1 TGAATTT
26236 TGAATTT
1 TGAATTT
26243 TGAATTT
1 TGAATTT
26250 TGAATTT
1 TGAATTT
26257 TGAATTT
1 TGAATTT
26264 TGAATTT
1 TGAATTT
26271 TGAATTT
1 TGAATTT
26278 TGAATTT
1 TGAATTT
26285 TGAATTT
1 TGAATTT
26292 TGAATTT
1 TGAATTT
26299 TGAATTT
1 TGAATTT
26306 TGAAAGAGTTT
1 TG--A-A-TTT
*
26317 TGAGTTT
1 TGAATTT
26324 TGAATTT
1 TGAATTT
26331 TGA
1 TGA
26334 GCAATGAAAT
Statistics
Matches: 378, Mismatches: 8, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
6 1 0.00
7 368 0.97
8 1 0.00
9 2 0.01
10 1 0.00
11 5 0.01
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.56
Consensus pattern (7 bp):
TGAATTT
Found at i:26342 original size:32 final size:32
Alignment explanation
Indices: 26254--26342 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 32
26244 GAATTTTGAA
***
26254 TTTTGAATTTTGAATTTTGAATTTTG--A-A-
1 TTTTGAATTTTGAATTTTGAACAATGAAAGAG
***
26282 TTTTGAATTTTGAATTTTGAATTTTGAAAGAG
1 TTTTGAATTTTGAATTTTGAACAATGAAAGAG
* *
26314 TTTTGAGTTTTGAATTTTGAGCAATGAAA
1 TTTTGAATTTTGAATTTTGAACAATGAAA
26343 TGCAAACAGT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
28 26 0.50
30 1 0.02
31 1 0.02
32 24 0.46
ACGTcount: A:0.30, C:0.01, G:0.18, T:0.51
Consensus pattern (32 bp):
TTTTGAATTTTGAATTTTGAACAATGAAAGAG
Found at i:26483 original size:33 final size:33
Alignment explanation
Indices: 26441--26518 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 33
26431 AGAAACTGTG
* * * *
26441 GATTTTGAACTTTGAGTTTTGATATGATATGTA
1 GATTTTGAACTTTGAATTTTGAAATGAAATGCA
26474 GATTTTGAACTTTGAATTTTGAAATGAAATGCA
1 GATTTTGAACTTTGAATTTTGAAATGAAATGCA
* *
26507 AATTTTAAACTT
1 GATTTTGAACTT
26519 CTTAATTAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (33 bp):
GATTTTGAACTTTGAATTTTGAAATGAAATGCA
Found at i:26717 original size:54 final size:54
Alignment explanation
Indices: 26581--27341 Score: 1088
Period size: 54 Copynumber: 14.3 Consensus size: 54
26571 TTCTTGGAAT
* * *
26581 GACCACACTTGGTCAGT-TTAGAGATCAAC-TATGATCAT-TGTAAACTTCT-TGGAAT
1 GACCACACTGGGTCA-TCTTA-AGATCAACTTA-GATC-TCTGAAAACTTCTAT-GAAA
* * * * * * *
26636 GACCACACTGGATCAACTTAAGGTCAACTTAGATTTTTGAAAATTTCTATGGAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
* * *
26690 GACCACACAGGGTCATCTGAAGATCAACTTAGACCTCT-AAAAGCTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAA-CTTCTATGAAA
* * *
26744 GACCACAATGGATCATCTTAAGATCAACTTAGATCTCTGAACACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
*
26798 GACCACAATGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
26852 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
* *
26906 -AGCCACACTGGGTCAACTTAAGATCAACTTAGATCTCTGAAAACTTGTATGAAA
1 GA-CCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
*
26960 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTTTGAAAACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
27014 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
* *
27068 GACCACACTGGATCAACTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
*
27122 GACCACATTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
* *
27176 GACCACACTGGATCAACTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
* * *
27230 GACAACAATAGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
27284 GA-C-CA------CA-C-T-AGATCAACTTAGATCTCTGAAAACTTCTATGAAA
1 GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
27327 GACCACACTGGGTCA
1 GACCACACTGGGTCA
27342 ACTTTCTAGA
Statistics
Matches: 642, Mismatches: 48, Indels: 36
0.88 0.07 0.05
Matches are distributed among these distances:
43 36 0.06
44 2 0.00
45 3 0.00
46 2 0.00
51 2 0.00
52 2 0.00
53 6 0.01
54 566 0.88
55 23 0.04
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (54 bp):
GACCACACTGGGTCATCTTAAGATCAACTTAGATCTCTGAAAACTTCTATGAAA
Found at i:27717 original size:37 final size:36
Alignment explanation
Indices: 27676--27866 Score: 131
Period size: 37 Copynumber: 5.2 Consensus size: 36
27666 CCTAAATTGG
* *
27676 GATTTTGAAGAGACACCTAAACATGTATCTTAAACAA
1 GATTTTGAA-AGACACCTAAACAGGAATCTTAAACAA
* * * * *
27713 GATTTTG-ATGACACTTAAA-AGGGGACCTTAAATAA
1 GATTTTGAAAGACACCTAAACA-GGAATCTTAAACAA
* *
27748 GGA-TTTGATAAGAAACCTAAACAGGAATCTTGAACAA
1 -GATTTTGA-AAGACACCTAAACAGGAATCTTAAACAA
* * * *
27785 GGTTTTGATGAGACACCTAAACATGGACT-TTAAATAA
1 GATTTTGA-AAGACACCTAAACA-GGAATCTTAAACAA
* *
27822 GGA-TTTGATAAGAAACCTAAACAGGAATCTTGAACAA
1 -GATTTTGA-AAGACACCTAAACAGGAATCTTAAACAA
*
27859 GGTTTTGA
1 GATTTTGA
27867 TGAGATTGAA
Statistics
Matches: 118, Mismatches: 26, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
34 1 0.01
35 23 0.19
36 9 0.08
37 79 0.67
38 6 0.05
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (36 bp):
GATTTTGAAAGACACCTAAACAGGAATCTTAAACAA
Found at i:27719 original size:234 final size:234
Alignment explanation
Indices: 27305--27781 Score: 936
Period size: 234 Copynumber: 2.0 Consensus size: 234
27295 ATCAACTTAG
27305 ATCTCTGAAAACTTCTATGAAAGACCACACTGGGTCAACTTTCTAGAGAGACCGCACTGGATCAT
1 ATCT-TGAAAACTTCTATGAAAGACCACACTGGGTCAACTTTCTAGAGAGACCGCACTGGATCAT
27370 TTTAAACACAAAACAGGAATTTTGAACAAGAAATGGATTTTGAACAAAATTTTGATAAGAAACCT
65 TTTAAACACAAAACAGGAATTTTGAACAAGAAATGGATTTTGAACAAAATTTTGATAAGAAACCT
27435 AAATTGGGATTTTGAAGAGACACCTAAACATGTATCTTAAACAAGATTTTGATGACACTTAAAAG
130 AAATTGGGATTTTGAAGAGACACCTAAACATGTATCTTAAACAAGATTTTGATGACACTTAAAAG
27500 GGGACCTTAAATAAGGATTTGATAAGAAACCTAAACAGGA
195 GGGACCTTAAATAAGGATTTGATAAGAAACCTAAACAGGA
27540 ATCTTGAAAACTTCTATGAAAGACCACACTGGGTCAACTTTCTAGAGAGACCGCACTGGATCATT
1 ATCTTGAAAACTTCTATGAAAGACCACACTGGGTCAACTTTCTAGAGAGACCGCACTGGATCATT
*
27605 TTAAACACAAAACAGGAATTTTGAACAAGAAATGGGTTTTGAACAAAATTTTGATAAGAAACCTA
66 TTAAACACAAAACAGGAATTTTGAACAAGAAATGGATTTTGAACAAAATTTTGATAAGAAACCTA
27670 AATTGGGATTTTGAAGAGACACCTAAACATGTATCTTAAACAAGATTTTGATGACACTTAAAAGG
131 AATTGGGATTTTGAAGAGACACCTAAACATGTATCTTAAACAAGATTTTGATGACACTTAAAAGG
27735 GGACCTTAAATAAGGATTTGATAAGAAACCTAAACAGGA
196 GGACCTTAAATAAGGATTTGATAAGAAACCTAAACAGGA
27774 ATCTTGAA
1 ATCTTGAA
27782 CAAGGTTTTG
Statistics
Matches: 241, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
234 237 0.98
235 4 0.02
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (234 bp):
ATCTTGAAAACTTCTATGAAAGACCACACTGGGTCAACTTTCTAGAGAGACCGCACTGGATCATT
TTAAACACAAAACAGGAATTTTGAACAAGAAATGGATTTTGAACAAAATTTTGATAAGAAACCTA
AATTGGGATTTTGAAGAGACACCTAAACATGTATCTTAAACAAGATTTTGATGACACTTAAAAGG
GGACCTTAAATAAGGATTTGATAAGAAACCTAAACAGGA
Found at i:27837 original size:74 final size:74
Alignment explanation
Indices: 27690--27871 Score: 271
Period size: 74 Copynumber: 2.5 Consensus size: 74
27680 TTGAAGAGAC
* * * * *
27690 ACCTAAACATGTATCTTAAACAAGATTTTGAT--GACACTTAAAAGGGGACCTTAAATAAGGATT
1 ACCTAAACAGGAATCTTGAACAAGGTTTTGATGAGACACCTAAAAGGGGACCTTAAATAAGGATT
27753 TGATAAGAA
66 TGATAAGAA
* *
27762 ACCTAAACAGGAATCTTGAACAAGGTTTTGATGAGACACCTAAACA-TGGACTTTAAATAAGGAT
1 ACCTAAACAGGAATCTTGAACAAGGTTTTGATGAGACACCTAAA-AGGGGACCTTAAATAAGGAT
27826 TTGATAAGAA
65 TTGATAAGAA
27836 ACCTAAACAGGAATCTTGAACAAGGTTTTGATGAGA
1 ACCTAAACAGGAATCTTGAACAAGGTTTTGATGAGA
27872 TTGAATTTTG
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
72 28 0.28
74 71 0.71
75 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (74 bp):
ACCTAAACAGGAATCTTGAACAAGGTTTTGATGAGACACCTAAAAGGGGACCTTAAATAAGGATT
TGATAAGAA
Found at i:27867 original size:37 final size:37
Alignment explanation
Indices: 27746--27867 Score: 165
Period size: 37 Copynumber: 3.3 Consensus size: 37
27736 GACCTTAAAT
27746 AAGGATTTGATAAGAAACCTAAACAGGAATCTTGAAC
1 AAGGATTTGATAAGAAACCTAAACAGGAATCTTGAAC
* * * * * *
27783 AAGGTTTTGATGAGACACCTAAACATGGACT-TTAAAT
1 AAGGATTTGATAAGAAACCTAAACA-GGAATCTTGAAC
27820 AAGGATTTGATAAGAAACCTAAACAGGAATCTTGAAC
1 AAGGATTTGATAAGAAACCTAAACAGGAATCTTGAAC
*
27857 AAGGTTTTGAT
1 AAGGATTTGAT
27868 GAGATTGAAT
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
36 4 0.06
37 62 0.89
38 4 0.06
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (37 bp):
AAGGATTTGATAAGAAACCTAAACAGGAATCTTGAAC
Found at i:28848 original size:17 final size:16
Alignment explanation
Indices: 28828--28891 Score: 69
Period size: 17 Copynumber: 3.9 Consensus size: 16
28818 AACCTTTTCC
*
28828 TTTTGATTTTTCTTTCT
1 TTTTGCTTTTTCTTT-T
28845 TTTT-CTTTTTTCTTTT
1 TTTTGC-TTTTTCTTTT
*
28861 TCTTTGCTTTCTCTTTT
1 T-TTTGCTTTTTCTTTT
28878 TTTT-CTTTTTCTTT
1 TTTTGCTTTTTCTTT
28892 AGATAGCTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
15 9 0.22
16 5 0.12
17 26 0.63
18 1 0.02
ACGTcount: A:0.02, C:0.16, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTGCTTTTTCTTTT
Found at i:28848 original size:23 final size:24
Alignment explanation
Indices: 28822--28870 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
28812 AATTTGAACC
28822 TTTTCCTTTTGATTTTTCTTT-CT
1 TTTTCCTTTTGATTTTTCTTTGCT
* **
28845 TTTTCTTTTTTCTTTTTCTTTGCT
1 TTTTCCTTTTGATTTTTCTTTGCT
28869 TT
1 TT
28871 CTCTTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.78
Consensus pattern (24 bp):
TTTTCCTTTTGATTTTTCTTTGCT
Found at i:28854 original size:7 final size:6
Alignment explanation
Indices: 28840--28891 Score: 52
Period size: 6 Copynumber: 8.2 Consensus size: 6
28830 TTGATTTTTC
*
28840 TTTCTT TTTCTTT TTTCTT TTTCTTT GCTTTCTC TTT-TT TTTCTT TTTCTT
1 TTTCTT TTTC-TT TTTCTT TTTC-TT --TTTCTT TTTCTT TTTCTT TTTCTT
28891 T
1 T
28892 AGATAGCTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
5 4 0.10
6 22 0.56
7 8 0.21
8 1 0.03
9 4 0.10
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTCTT
Found at i:28877 original size:23 final size:23
Alignment explanation
Indices: 28834--28891 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 23
28824 TTCCTTTTGA
*
28834 TTTTTCTTTCTTTTTCTTTTTTC
1 TTTTTCTTTCTTTCTCTTTTTTC
28857 TTTTTCTTTGCTTTCTCTTTTTTTTC
1 TTTTTCTTT-CTTTCTC--TTTTTTC
28883 TTTTTCTTT
1 TTTTTCTTT
28892 AGATAGCTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 9 0.29
24 6 0.19
26 16 0.52
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (23 bp):
TTTTTCTTTCTTTCTCTTTTTTC
Found at i:29550 original size:14 final size:13
Alignment explanation
Indices: 29531--29595 Score: 69
Period size: 14 Copynumber: 4.8 Consensus size: 13
29521 ACTCAAAACC
29531 TTTTTGAAAACTCA
1 TTTTTGAAAA-TCA
29545 TTTTTGAAAATCA
1 TTTTTGAAAATCA
*
29558 TTTATTGAAAA-CTG
1 TTT-TTGAAAATC-A
*
29572 TTTCTTTAAAATCA
1 TTT-TTGAAAATCA
29586 TTTTTGAAAA
1 TTTTTGAAAA
29596 ACGTCCTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
13 13 0.30
14 29 0.67
15 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTTTGAAAATCA
Found at i:29566 original size:28 final size:27
Alignment explanation
Indices: 29531--29595 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 27
29521 ACTCAAAACC
29531 TTTTTGAAAACTCATTT-TTGAAAATCA
1 TTTTTGAAAACT-ATTTCTTGAAAATCA
* *
29558 TTTATTGAAAACTGTTTCTTTAAAATCA
1 TTT-TTGAAAACTATTTCTTGAAAATCA
29586 TTTTTGAAAA
1 TTTTTGAAAA
29596 ACGTCCTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 13 0.38
28 21 0.62
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.46
Consensus pattern (27 bp):
TTTTTGAAAACTATTTCTTGAAAATCA
Found at i:32573 original size:22 final size:23
Alignment explanation
Indices: 32548--32598 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
32538 TTAAAAGGAA
* *
32548 TTTTAGAAGCAA-TTTGGGATTG
1 TTTTAGAAGAAATTTTGGGATGG
* *
32570 TTTTTGATGAAATTTTGGGATGG
1 TTTTAGAAGAAATTTTGGGATGG
32593 TTTTAG
1 TTTTAG
32599 CTCTAGGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (23 bp):
TTTTAGAAGAAATTTTGGGATGG
Found at i:34336 original size:23 final size:23
Alignment explanation
Indices: 34307--34350 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
34297 TGGTTTGTAG
*
34307 AGACCGAGCGAGAGTGATCAAAT
1 AGACCGAGCAAGAGTGATCAAAT
*
34330 AGACCGAGCAAGAGTGCTCAA
1 AGACCGAGCAAGAGTGATCAA
34351 GATTGTTGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.20, G:0.30, T:0.11
Consensus pattern (23 bp):
AGACCGAGCAAGAGTGATCAAAT
Found at i:34887 original size:21 final size:22
Alignment explanation
Indices: 34840--34888 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 22
34830 TCCAACATAT
*
34840 TCCAAGATTCTTTATGGTCATCC
1 TCCAAGATTCCTTATGGTCA-CC
34863 TCCAAGATTCCTTATGGTC-CC
1 TCCAAGATTCCTTATGGTCACC
34884 TCCAA
1 TCCAA
34889 CTAGACAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 7 0.28
23 18 0.72
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (22 bp):
TCCAAGATTCCTTATGGTCACC
Found at i:46910 original size:223 final size:224
Alignment explanation
Indices: 46521--46967 Score: 887
Period size: 223 Copynumber: 2.0 Consensus size: 224
46511 TTGCTTGAGT
46521 AATATTGGTTATGAATATTTTTCTTAATCAGATTTTTTAAAAAATTTATATTTATGTTATCTATT
1 AATATTGGTTATGAATATTTTTCTTAATCAGATTTTTTAAAAAATTTATATTTATGTTATCTATT
46586 TTTATTTATTTAAGGTGATAAATTTTTAATTTTATTTTATTCATGTATAGTATACAAAATTAAAT
66 TTTATTTATTTAAGGTGATAAATTTTTAATTTTATTTTATTCATGTATAGTATACAAAATTAAAT
46651 AGTCTATAATTAAGTGATAAGTAAAATATTTATTTTAATTAATTATAAAGACATATATATAATAC
131 AGTCTATAATTAAGTGATAAGTAAAATATTTATTTTAATTAATTATAAAGACATATATATAATAC
46716 ACATTTATGTCCTTATTTGTCATTTCCAC
196 ACATTTATGTCCTTATTTGTCATTTCCAC
46745 AATATTGGTTATGAATATTTTTCTTAATCAGATTTTTT-AAAAATTTATATTTATGTTATCTATT
1 AATATTGGTTATGAATATTTTTCTTAATCAGATTTTTTAAAAAATTTATATTTATGTTATCTATT
46809 TTTATTTATTTAAGGTGATAAATTTTTAATTTTATTTTATTCATGTATAGTATACAAAATTAAAT
66 TTTATTTATTTAAGGTGATAAATTTTTAATTTTATTTTATTCATGTATAGTATACAAAATTAAAT
46874 AGTCTATAATTAAGTGATAAGTAAAATATTTATTTTAATTAATTATAAAGACATATATATAATAC
131 AGTCTATAATTAAGTGATAAGTAAAATATTTATTTTAATTAATTATAAAGACATATATATAATAC
46939 ACATTTATGTCCTTATTTGTCATTTCCAC
196 ACATTTATGTCCTTATTTGTCATTTCCAC
46968 TCATTATCTC
Statistics
Matches: 223, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
223 185 0.83
224 38 0.17
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.49
Consensus pattern (224 bp):
AATATTGGTTATGAATATTTTTCTTAATCAGATTTTTTAAAAAATTTATATTTATGTTATCTATT
TTTATTTATTTAAGGTGATAAATTTTTAATTTTATTTTATTCATGTATAGTATACAAAATTAAAT
AGTCTATAATTAAGTGATAAGTAAAATATTTATTTTAATTAATTATAAAGACATATATATAATAC
ACATTTATGTCCTTATTTGTCATTTCCAC
Found at i:47617 original size:28 final size:27
Alignment explanation
Indices: 47546--47619 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 27
47536 TAAACTTTTA
47546 AAATTT-ATAAA-AATTAAATAAAAAT
1 AAATTTAATAAATAATTAAATAAAAAT
* * * *
47571 AAATATAAAAAAGTTATTAAATAAATAT
1 AAATTTAATAAA-TAATTAAATAAAAAT
47599 AAATTTTAATAAATAATTAAA
1 AAA-TTTAATAAATAATTAAA
47620 ATTGCATGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
25 5 0.13
26 4 0.11
28 22 0.58
29 7 0.18
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (27 bp):
AAATTTAATAAATAATTAAATAAAAAT
Found at i:48169 original size:37 final size:37
Alignment explanation
Indices: 48119--48189 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
48109 ATATAATTAT
* *
48119 TCATAAAGTTATGTCTATTTGGAAAGACATGTATTGA
1 TCATAAAGTTATGTCTATATGAAAAGACATGTATTGA
48156 TCATAAAGTTATGTCTATATGAAAAGACATGTAT
1 TCATAAAGTTATGTCTATATGAAAAGACATGTAT
48190 GTTGATCAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (37 bp):
TCATAAAGTTATGTCTATATGAAAAGACATGTATTGA
Found at i:53540 original size:45 final size:45
Alignment explanation
Indices: 53476--53565 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
53466 CATTTACTTT
53476 TTATCTTTCCAACAAATTTATTCCCTTGGGTTTTCTGACTAAGGG
1 TTATCTTTCCAACAAATTTATTCCCTTGGGTTTTCTGACTAAGGG
53521 TTATCTTTCCAACAAATTTATTCCCTTGGGTTTTCTGACTAAGGG
1 TTATCTTTCCAACAAATTTATTCCCTTGGGTTTTCTGACTAAGGG
53566 GTGCATGGGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (45 bp):
TTATCTTTCCAACAAATTTATTCCCTTGGGTTTTCTGACTAAGGG
Found at i:56610 original size:17 final size:18
Alignment explanation
Indices: 56585--56618 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
56575 TCTATTCCGG
*
56585 CAATGAAGCATTTTAATT
1 CAATGAAGCATCTTAATT
56603 CAAT-AAGCATCTTAAT
1 CAATGAAGCATCTTAAT
56619 AACTTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (18 bp):
CAATGAAGCATCTTAATT
Found at i:61429 original size:24 final size:26
Alignment explanation
Indices: 61388--61439 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 26
61378 GAATGCTCAA
* * *
61388 GATTGGTTGGATTTGGTTTAG-GATT
1 GATTGGTTAGATTGGGTTGAGAGATT
61413 GATT-GTTAGATTGGGTTGAGAGATT
1 GATTGGTTAGATTGGGTTGAGAGATT
61438 GA
1 GA
61440 GTGAGAGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (26 bp):
GATTGGTTAGATTGGGTTGAGAGATT
Found at i:67847 original size:31 final size:28
Alignment explanation
Indices: 67799--67869 Score: 108
Period size: 30 Copynumber: 2.5 Consensus size: 28
67789 CAAATTCCCA
67799 AGTCTCACCT-AACCTGGAGCTTCTTTTG
1 AGTCTCACCTAAACCTGGAGCTTC-TTTG
67827 AGCCTCTCACCTAAACCTGGAGCTTCTTTG
1 AG--TCTCACCTAAACCTGGAGCTTCTTTG
67857 AGTCTCACCTAAA
1 AGTCTCACCTAAA
67870 ACCCTAGATA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
28 13 0.32
30 14 0.35
31 13 0.32
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (28 bp):
AGTCTCACCTAAACCTGGAGCTTCTTTG
Found at i:70245 original size:76 final size:76
Alignment explanation
Indices: 70108--70259 Score: 175
Period size: 76 Copynumber: 2.0 Consensus size: 76
70098 ACAAGGGCCC
** * *
70108 CGACTCCACCTGGGTGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
1 CGACTCCACCTGGGTGCCCACATGGTTGCCTAAAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
70173 GGG-TAGTGTCA
66 GGGCT-GTGTCA
** * **
70184 CGACTCCTGCTGGGTGCCCACATGGTTTCTCTAAAG-ACCCATGT-GTTTCGCCTGATCACCCAG
1 CGACTCCACCTGGGTGCCCACATGGTTGC-CTAAAGCACCCATGTGGTTT-GCCTGAGAACCCAG
70247 ATGGGCTGTGTCA
64 ATGGGCTGTGTCA
70260 TAGTTCATCA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
75 4 0.06
76 55 0.86
77 5 0.08
ACGTcount: A:0.17, C:0.29, G:0.28, T:0.26
Consensus pattern (76 bp):
CGACTCCACCTGGGTGCCCACATGGTTGCCTAAAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCTGTGTCA
Found at i:71707 original size:5 final size:5
Alignment explanation
Indices: 71699--71738 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
71689 AAGTTTATTG
71699 ATAAT ATAAT ATAAT ATAAT ATAATT ATCAAT AT-AT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAA-T AT-AAT ATAAT ATAA
71739 AGATTAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 4 0.12
5 20 0.62
6 6 0.19
7 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:76471 original size:35 final size:35
Alignment explanation
Indices: 76391--76803 Score: 474
Period size: 35 Copynumber: 11.8 Consensus size: 35
76381 GAATCAGTAA
* * *
76391 TAAGTAACTTAATCCAGGGTAATTAAGTAAAGTAAA
1 TAAGTAACTTAATTCAGGGTAATTAAGT-AAGTCAG
* ** * *
76427 TAA-TCAACTTAATTTAGGGTAATTAAGTCGGTTAA
1 TAAGT-AACTTAATTCAGGGTAATTAAGTAAGTCAG
*
76462 TAAGTAACTTAATTCAGGGTAATTAAGTAGGTCAG
1 TAAGTAACTTAATTCAGGGTAATTAAGTAAGTCAG
* *
76497 TAAGTAACTTAATTCGGGGTAATTAAGTAGGTCAG
1 TAAGTAACTTAATTCAGGGTAATTAAGTAAGTCAG
* *
76532 TAAGTAACTTAATTCGGGGTAATTAAGTAAATCAG
1 TAAGTAACTTAATTCAGGGTAATTAAGTAAGTCAG
* * *
76567 TAAGCAACTTAATTCAGGGTAATTAAGTAAGTTAA
1 TAAGTAACTTAATTCAGGGTAATTAAGTAAGTCAG
** *
76602 TAAACAACTTAATTCAGGGTAATTAAGCAAGTCAG
1 TAAGTAACTTAATTCAGGGTAATTAAGTAAGTCAG
*
76637 TAA-TCAACTTAATTCAGGGTAATTAAGTGAGTCAG
1 TAAGT-AACTTAATTCAGGGTAATTAAGTAAGTCAG
* * * * *
76672 TGA-TCAACTTAGTTCAGGATAACTAAGTAAGTCAA
1 TAAGT-AACTTAATTCAGGGTAATTAAGTAAGTCAG
*
76707 TAAGTAACTTAATTCAGGGTAATTAAGTAAGTTAG
1 TAAGTAACTTAATTCAGGGTAATTAAGTAAGTCAG
* * *
76742 TAAGTAATTTAATTCAGGGTAATTACA-CAATTCAG
1 TAAGTAACTTAATTCAGGGTAATTA-AGTAAGTCAG
* *
76777 TAAGTAGCTTAATTCAGGGTAGTTAAG
1 TAAGTAACTTAATTCAGGGTAATTAAG
76804 GTAATTAAGT
Statistics
Matches: 328, Mismatches: 43, Indels: 13
0.85 0.11 0.03
Matches are distributed among these distances:
34 1 0.00
35 300 0.91
36 27 0.08
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (35 bp):
TAAGTAACTTAATTCAGGGTAATTAAGTAAGTCAG
Found at i:89469 original size:54 final size:54
Alignment explanation
Indices: 89391--89506 Score: 198
Period size: 54 Copynumber: 2.1 Consensus size: 54
89381 ACATCTGCAC
*
89391 GAGATTACCACCCAAGATCACCATGAGTGA-TCTGCAAACCAAATAGGGTGATCT
1 GAGATTACCACCCAAGATCACCATGAGT-ATTCTGCAAACCAAACAGGGTGATCT
*
89445 GAGATTACCACCCAAGATCACCATGGGTATTCTGCAAACCAAACAGGGTGATCT
1 GAGATTACCACCCAAGATCACCATGAGTATTCTGCAAACCAAACAGGGTGATCT
89499 GAGATTAC
1 GAGATTAC
89507 GCCACAAGTG
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
53 1 0.02
54 58 0.98
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (54 bp):
GAGATTACCACCCAAGATCACCATGAGTATTCTGCAAACCAAACAGGGTGATCT
Found at i:91463 original size:30 final size:29
Alignment explanation
Indices: 91404--91466 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 29
91394 CTCAAGAATG
*
91404 AATTGTGCTTACTTCATGTAGCAAAAAAAA
1 AATTGTGCTTACTTCATATA-CAAAAAAAA
91434 AATTGTGCTTACTTCATATA-AAAGGAAAAA
1 AATTGTGCTTACTTCATATACAAA--AAAAA
91464 AAT
1 AAT
91467 ATTAAAATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 3 0.10
30 27 0.90
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (29 bp):
AATTGTGCTTACTTCATATACAAAAAAAA
Found at i:98806 original size:21 final size:21
Alignment explanation
Indices: 98773--98826 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
98763 CTCCACCTGG
*
98773 GCACCCACATGG-TTGCCTTGA
1 GCACCCACGTGGTTTG-CTTGA
*
98794 GCACCCATGTGGTTTGCTTGA
1 GCACCCACGTGGTTTGCTTGA
* *
98815 GAACCCAGGTGG
1 GCACCCACGTGG
98827 GCAGTGTCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (21 bp):
GCACCCACGTGGTTTGCTTGA
Found at i:98897 original size:76 final size:76
Alignment explanation
Indices: 98760--98910 Score: 173
Period size: 76 Copynumber: 2.0 Consensus size: 76
98750 ACAAGGACCC
* *
98760 CGACTCCACCTGGGCACCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
1 CGACTCCACCTGGGCACCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
98825 GGGCAGTGTCA
66 GGGCAGTGTCA
* ** * **
98836 CGACTCCAGCTGGGTGCCCACATGGTTTGTC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
1 CGACTCCACCTGGGCACCCACATGG-TTGCCTTG-AGCACCCATGTGGTTT-GCCTGAGAACCCA
*
98898 GATGGGCTGTGTC
63 GATGGGCAGTGTC
98911 TTAGCTCATC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
75 4 0.06
76 53 0.84
77 6 0.10
ACGTcount: A:0.17, C:0.30, G:0.28, T:0.25
Consensus pattern (76 bp):
CGACTCCACCTGGGCACCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCAGTGTCA
Found at i:104510 original size:20 final size:22
Alignment explanation
Indices: 104466--104512 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
104456 CAGAAAAGAA
104466 AATCAGAATCCAATCATAATTCAG
1 AATCAGAATCCAA-CAT-ATTCAG
104490 AATCAGAATCCAA-AT-TTCAG
1 AATCAGAATCCAACATATTCAG
104510 AAT
1 AAT
104513 AAACATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.35
22 2 0.09
24 13 0.57
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.26
Consensus pattern (22 bp):
AATCAGAATCCAACATATTCAG
Found at i:104769 original size:25 final size:24
Alignment explanation
Indices: 104735--104792 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 24
104725 AATAGAATTA
*
104735 CAGAAACCAACCAGAATTCAAAAAT
1 CAGAATCCAACCAGAATTC-AAAAT
* * *
104760 CAGAATCCAATCATAATTCAGAAT
1 CAGAATCCAACCAGAATTCAAAAT
*
104784 TAGAATCCA
1 CAGAATCCA
104793 TATCTCAGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 12 0.43
25 16 0.57
ACGTcount: A:0.50, C:0.22, G:0.09, T:0.19
Consensus pattern (24 bp):
CAGAATCCAACCAGAATTCAAAAT
Done.