Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016917.1 Corchorus olitorius cultivar O-4 contig16950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54577

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6143--6196
19
2.6
21
77
19
60
38
3
18
38
1.69
11031--11064
10
3.4
10
91
0
50
47
14
14
23
1.82
13392--13499
51
2.1
51
100
0
216
41
21
12
24
1.88
13522--13557
12
3.0
12
100
0
72
16
41
8
33
1.78
15247--15555
150
2.1
150
94
1
539
28
14
27
30
1.95
16979--17062
16
5.2
16
63
11
55
38
30
8
22
1.84
16963--17063
32
3.2
32
90
2
159
37
32
9
19
1.85
18282--18306
5
5.0
5
100
0
50
0
20
0
80
0.72
18811--18843
16
2.0
17
88
5
50
48
0
0
51
1.00
18879--18903
5
5.0
5
100
0
50
0
40
60
0
0.97
22420--22462
17
2.5
17
84
0
59
51
2
0
46
1.13
25010--25039
2
15.5
2
93
6
53
50
0
0
50
1.00
25146--25191
21
2.2
21
84
7
58
45
2
4
47
1.34
25158--25191
18
1.9
17
88
5
50
47
0
2
50
1.16
26655--26806
75
2.0
75
89
2
234
36
15
22
25
1.93
29807--29846
19
2.1
19
90
0
62
47
22
5
25
1.71
36871--36923
22
2.4
22
76
17
56
67
3
9
18
1.33
39014--39072
26
2.2
27
90
6
102
23
33
3
38
1.72
39285--39336
17
3.0
17
78
13
52
32
21
0
46
1.52
40033--40057
12
2.1
12
100
0
50
56
20
0
24
1.43
41068--41092
12
2.1
12
100
0
50
56
8
20
16
1.65
44444--44475
13
2.5
13
100
0
64
25
21
0
53
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47191--47318
22
5.8
22
75
9
100
42
14
7
35
1.74
47196--47318
44
2.8
45
83
3
133
43
14
8
34
1.75
47346--47436
48
1.9
47
82
10
114
43
10
19
25
1.84
47173--47474
22
13.5
22
67
14
95
42
10
14
31
1.80
47515--47739
22
10.3
22
69
7
118
32
12
16
38
1.86
47590--47717
44
2.9
45
82
4
136
32
13
16
37
1.87
47590--47739
44
3.4
43
77
9
131
32
13
16
38
1.87
53721--53769
23
2.2
22
82
10
64
36
16
12
34
1.86

Tables:   1

The End!