Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016918.1 Corchorus olitorius cultivar O-4 contig16951, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14018
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30


Found at i:2935 original size:24 final size:24

Alignment explanation


    Indices: 2878--2923  Score: 74
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       2868 TATGCCATAG

                         *          
       2878 AACAGAATCAACATCATTACAAAC
          1 AACAGAATCAACAGCATTACAAAC

                          *       
       2902 AACAGAATCAACAGGATTACAA
          1 AACAGAATCAACAGCATTACAA

       2924 GGAATAGAAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.54, C:0.22, G:0.09, T:0.15


Consensus pattern (24 bp):   
AACAGAATCAACAGCATTACAAAC

Found at i:4929 original size:21 final size:22

Alignment explanation


    Indices: 4881--4929  Score: 64
    Period size: 23  Copynumber: 2.2  Consensus size: 22

       4871 TAACTAACAC

                      *      *    
       4881 CTAACCATAGGTTAGTTGTATA
          1 CTAACCATAGATTAGTTATATA

                                   
       4903 CTTAACCATAGATTAGTTATA-A
          1 C-TAACCATAGATTAGTTATATA

                 
       4925 CTAAC
          1 CTAAC

       4930 TACCAGAAAG


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  21    4  0.17
  22    3  0.12
  23   17  0.71

ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35


Consensus pattern (22 bp):   
CTAACCATAGATTAGTTATATA
Done.