genome.fa.s16919.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016919.1 Corchorus olitorius cultivar O-4 contig16952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92484

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119--161	16	2.7	16	77	0	50	51	4	2	41	1.35
125--149	13	1.9	13	100	0	50	48	4	0	48	1.20
5657--5703	21	2.3	21	92	3	78	34	21	14	29	1.93
5720--5882	37	4.5	36	87	6	208	30	17	16	36	1.92
5720--5882	72	2.3	71	84	8	206	30	17	16	36	1.92
8503--8541	19	2.1	19	90	0	60	38	30	17	12	1.88
20219--20299	35	2.3	35	93	0	135	28	17	12	41	1.85
26152--26386	116	2.0	116	100	0	470	31	16	27	24	1.96
29050--29112	27	2.4	27	94	2	110	15	19	23	41	1.90
31151--31180	2	15.0	2	100	0	60	50	0	0	50	1.00
32870--33210	36	10.4	36	72	20	282	49	6	17	26	1.71
32953--33139	27	6.2	27	72	22	151	49	6	17	26	1.71
32870--33174	63	4.8	63	89	2	475	49	6	18	25	1.71
32870--33185	127	2.5	127	86	5	367	49	6	18	25	1.71
32870--33237	128	2.9	126	83	6	352	48	7	17	26	1.73
33221--33698	72	6.7	71	82	8	476	44	11	16	26	1.82
33227--33698	107	4.4	108	83	5	557	44	11	16	27	1.82
33248--33698	36	12.6	35	74	13	232	44	11	16	27	1.82
33608--33698	33	2.6	35	87	5	132	41	8	18	30	1.81
38092--38243	76	2.0	76	81	7	175	17	28	29	24	1.97
43756--44005	91	2.7	91	98	0	482	37	12	8	42	1.73
44432--44472	22	1.9	21	95	5	73	56	19	9	14	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48354--48427	29	2.5	30	88	4	105	24	17	13	44	1.85
48571--48660	29	3.1	30	92	6	150	42	12	15	30	1.83
48702--48743	15	2.7	15	85	3	57	2	23	0	73	0.94
48819--49058	126	1.9	124	84	10	317	51	0	12	35	1.45
49672--49731	31	1.9	31	93	3	102	30	11	10	48	1.72
49861--49941	30	2.7	30	84	5	92	40	11	17	30	1.84
54320--55230	228	4.0	228	84	1	975	30	21	23	24	1.98
54320--55230	456	2.0	456	81	1	1074	30	21	23	24	1.98
57264--57926	22	30.3	22	71	13	307	35	16	8	39	1.79
57730--57919	88	2.2	88	97	0	353	38	12	9	40	1.75
58049--58263	22	9.8	22	71	9	109	33	16	9	40	1.81
58029--58191	89	1.8	89	82	2	211	34	14	9	41	1.78
58049--58213	44	3.8	42	73	7	125	34	15	8	41	1.77
58358--58417	22	2.7	22	80	10	68	35	16	10	38	1.82
58447--58658	22	9.5	22	73	12	159	37	19	8	34	1.83
58426--58658	66	3.5	66	84	7	274	36	18	9	35	1.83
58422--58654	44	5.2	43	76	9	193	36	18	9	36	1.83
68439--68475	19	2.0	19	94	5	67	62	0	0	37	0.96
71561--71599	19	2.1	19	100	0	78	43	15	25	15	1.86
71875--71905	15	2.1	15	100	0	62	32	19	0	48	1.49
75722--75762	21	2.0	21	90	0	64	36	39	9	14	1.79
76574--76610	19	1.9	19	94	0	65	37	10	27	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86592--86674	33	2.5	33	92	0	139	21	42	15	20	1.89
86616--86707	33	2.8	33	85	3	114	26	42	13	18	1.86
86754--86876	63	2.0	63	85	3	167	18	44	15	21	1.86
87906--87966	30	2.0	30	100	0	122	29	13	16	40	1.86
92288--92330	21	2.0	22	82	13	54	25	4	6	62	1.40

Tables:   1

The End!