Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016921.1 Corchorus olitorius cultivar O-4 contig16954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2545
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.36


Found at i:807 original size:23 final size:23

Alignment explanation


    Indices: 771--896  Score: 126
    Period size: 23  Copynumber: 5.4  Consensus size: 23

        761 CTGAAATTGC

                            *       
        771 TGCTGTTTTTTCTGTTAAAAATGT
          1 TGCTG-TTTTTCTGTTCAAAATGT

             *             *  *    
        795 TACTGTTTTTCTGTTGAAGATGT
          1 TGCTGTTTTTCTGTTCAAAATGT

              *               *    
        818 TGTTGTTTTTCTGTTCAAGATGT
          1 TGCTGTTTTTCTGTTCAAAATGT

                     **            
        841 TGCTGTTTTGATGTTCAAAATGT
          1 TGCTGTTTTTCTGTTCAAAATGT

              *      **  *         
        864 TGTTGTTTTGATGATCAAAATGT
          1 TGCTGTTTTTCTGTTCAAAATGT

              *       
        887 TGTTGTTTTT
          1 TGCTGTTTTT

        897 TTTTTTTTTT


Statistics
Matches: 89,  Mismatches: 13, Indels: 1
        0.86            0.13        0.01

Matches are distributed among these distances:
  23   85  0.96
  24    4  0.04

ACGTcount: A:0.18, C:0.07, G:0.21, T:0.54


Consensus pattern (23 bp):   
TGCTGTTTTTCTGTTCAAAATGT

Done.