Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016925.1 Corchorus olitorius cultivar O-4 contig16958, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45707

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3752--3782
15
2.1
15
100
0
62
61
12
6
19
1.53
3810--3846
14
2.6
14
91
0
65
64
0
10
24
1.25
6558--6624
30
2.2
30
91
0
107
44
23
11
19
1.84
9077--9150
25
2.8
26
80
13
80
68
8
2
20
1.27
9086--9150
14
4.9
14
70
22
50
69
9
3
18
1.29
9158--9277
36
3.4
36
85
1
179
29
14
15
40
1.87
9155--9326
72
2.4
71
86
7
224
28
13
15
41
1.86
11340--11427
32
2.7
31
76
20
92
21
23
14
39
1.91
11338--11428
33
2.8
32
79
8
112
20
24
14
40
1.90
11431--11735
38
8.0
38
94
0
538
32
16
19
31
1.94
13717--13752
19
1.9
18
88
5
54
27
22
8
41
1.82
14715--14756
15
2.8
16
78
10
52
71
0
11
16
1.14
23469--23523
21
2.6
21
91
0
92
3
41
18
36
1.68
24958--25000
18
2.4
18
84
0
50
9
6
44
39
1.64
35150--35319
85
2.0
84
90
1
268
52
2
12
31
1.52
35713--35805
31
3.0
31
98
0
177
40
6
22
30
1.79
35854--36150
149
2.0
149
95
1
542
42
12
4
40
1.63
39105--39236
68
1.9
68
89
6
205
47
14
12
25
1.78
42280--42365
43
2.0
43
100
0
172
27
23
13
34
1.93

Tables:   1

The End!