Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016926.1 Corchorus olitorius cultivar O-4 contig16959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1813
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35


Found at i:1461 original size:14 final size:16

Alignment explanation


    Indices: 1442--1473  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1432 ATCACATTAT

                            
       1442 TAATAAT-T-AATTTA
          1 TAATAATGTAAATTTA

                            
       1456 TAATAATGTAAATTTA
          1 TAATAATGTAAATTTA

              
       1472 TA
          1 TA

       1474 CCACTTAATG


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    7  0.44
  15    1  0.06
  16    8  0.50

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (16 bp):   
TAATAATGTAAATTTA

Found at i:1718 original size:6 final size:6

Alignment explanation


    Indices: 1707--1734  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       1697 TCAAATTTAA

                                            
       1707 AAATCC AAATCC AAATCC AAATCC AAAT
          1 AAATCC AAATCC AAATCC AAATCC AAAT

       1735 TTTAGTTCCC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.54, C:0.29, G:0.00, T:0.18


Consensus pattern (6 bp):   
AAATCC

Done.