Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016928.1 Corchorus olitorius cultivar O-4 contig16961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33277

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
268--307
16
2.5
16
100
0
80
25
27
12
35
1.92
907--1021
27
4.3
27
93
2
196
20
40
20
19
1.91
1084--1137
15
3.4
15
76
14
54
37
29
12
20
1.90
1085--1151
33
2.0
33
91
0
107
37
28
13
20
1.91
1091--1162
33
2.2
33
87
0
99
40
23
16
19
1.91
3777--3917
25
5.6
25
90
0
219
29
27
19
23
1.98
3777--3940
75
2.2
75
85
0
220
29
28
19
22
1.98
3777--3940
50
3.3
50
85
0
211
29
28
19
22
1.98
12577--12678
50
2.0
50
96
0
186
23
17
24
34
1.96
13527--13590
31
2.1
30
82
5
76
26
9
23
40
1.85
14403--14465
25
2.7
23
79
18
67
30
6
6
57
1.49
14412--14465
25
2.2
26
90
6
85
29
3
5
61
1.36
21681--21734
27
2.0
27
88
0
81
35
12
22
29
1.91
30292--30361
35
2.0
35
97
0
131
17
12
20
50
1.78

Tables:   1

The End!