Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001693.1 Corchorus olitorius cultivar O-4 contig01693, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 686

Length: 1144
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35


Found at i:493 original size:27 final size:27

Alignment explanation


    Indices: 458--547  Score: 146
    Period size: 27  Copynumber: 3.4  Consensus size: 27

        448 CATTTCTTAA

                      *   *            
        458 TTGG-CATTTACACATCCAGGGGCATT
          1 TTGGTCATTTGCACGTCCAGGGGCATT

                                       
        484 TTGGTCATTTGCACGTCCAGGGGCATT
          1 TTGGTCATTTGCACGTCCAGGGGCATT

                         *             
        511 TTGGTCATTTGCATGTCCAGGGGCATT
          1 TTGGTCATTTGCACGTCCAGGGGCATT

                      
        538 TTGGTCATTT
          1 TTGGTCATTT

        548 TAAGCTCACT


Statistics
Matches: 60,  Mismatches: 3, Indels: 1
        0.94            0.05        0.02

Matches are distributed among these distances:
  26    4  0.07
  27   56  0.93

ACGTcount: A:0.17, C:0.20, G:0.27, T:0.37


Consensus pattern (27 bp):   
TTGGTCATTTGCACGTCCAGGGGCATT
Done.