Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016930.1 Corchorus olitorius cultivar O-4 contig16963, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2765
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37


Found at i:260 original size:22 final size:22

Alignment explanation


    Indices: 215--267  Score: 63
    Period size: 22  Copynumber: 2.4  Consensus size: 22

        205 TGCTTTCTAA

                              **  
        215 TTAATTGTTTTCTTTAATTTTC
          1 TTAATTGTTTTCTTTAATAGTC

              *                    
        237 TTGATTGTTTTC-TTAGATAGTC
          1 TTAATTGTTTTCTTTA-ATAGTC

                     
        259 TTAATTGTT
          1 TTAATTGTT

        268 AGTTTTATTT


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  21    3  0.12
  22   23  0.88

ACGTcount: A:0.19, C:0.08, G:0.11, T:0.62


Consensus pattern (22 bp):   
TTAATTGTTTTCTTTAATAGTC

Found at i:1932 original size:33 final size:33

Alignment explanation


    Indices: 1894--1959  Score: 132
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       1884 ACCTGGGATA

                                             
       1894 GAATTTGATTGTTTTTGATTGATCTTAATTTCC
          1 GAATTTGATTGTTTTTGATTGATCTTAATTTCC

                                             
       1927 GAATTTGATTGTTTTTGATTGATCTTAATTTCC
          1 GAATTTGATTGTTTTTGATTGATCTTAATTTCC

       1960 CTAATTTTTG


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.21, C:0.09, G:0.15, T:0.55


Consensus pattern (33 bp):   
GAATTTGATTGTTTTTGATTGATCTTAATTTCC
Done.