Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016934.1 Corchorus olitorius cultivar O-4 contig16967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62963

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7930--7994
10
6.8
10
71
16
57
55
1
0
43
1.09
8566--8598
2
16.0
2
93
6
57
48
0
3
48
1.17
9447--9511
33
2.0
33
93
0
112
40
18
7
33
1.79
9978--10087
22
4.7
22
73
12
103
50
0
4
44
1.22
9978--10091
11
10.8
11
68
9
67
51
0
4
43
1.21
10128--10176
20
2.5
20
87
6
75
44
38
14
2
1.56
11036--11070
16
2.2
16
100
0
70
51
5
5
37
1.50
13756--13799
17
2.6
17
85
0
61
56
0
11
31
1.35
13979--14011
2
16.5
2
100
0
66
51
0
0
48
1.00
18579--18613
16
2.2
16
94
0
61
51
8
5
34
1.56
18775--18818
17
2.6
17
85
0
61
54
2
11
31
1.48
18887--18922
17
2.1
18
89
5
56
36
11
16
36
1.84
24874--24915
14
2.8
16
82
10
52
38
14
9
38
1.78
28098--28147
26
2.0
26
88
4
75
44
2
6
48
1.39
29653--29722
29
2.4
29
85
2
86
37
28
12
21
1.90
35076--35125
21
2.4
21
100
0
100
30
20
20
30
1.97
36629--36697
33
2.1
33
91
0
111
30
20
10
39
1.85
39493--39602
33
3.3
33
87
2
157
27
20
13
39
1.90
44321--44658
179
1.9
177
85
3
473
35
15
15
33
1.89
45035--45303
131
2.1
131
89
1
405
38
9
2
49
1.48
46245--46304
31
1.9
31
86
6
86
13
16
31
38
1.87
46502--46542
21
1.9
22
85
5
57
9
17
29
43
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47135--47189
10
5.5
10
91
0
92
40
10
9
40
1.72
55146--55170
12
2.1
12
100
0
50
32
20
16
32
1.94
59245--59274
12
2.4
13
88
11
53
66
13
6
13
1.43

Tables:   1

The End!