Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016937.1 Corchorus olitorius cultivar O-4 contig16970, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96519

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
590--731
73
1.9
73
98
0
275
32
16
11
39
1.85
20914--20945
16
1.9
17
93
6
57
81
0
9
9
0.88
21183--21238
19
3.1
18
76
19
55
62
5
10
21
1.47
23145--23238
45
2.2
43
84
7
120
37
22
6
34
1.80
32186--32232
22
2.1
22
84
0
58
8
23
4
63
1.40
34930--34999
36
1.9
36
91
0
113
21
10
8
60
1.55
35510--35925
206
2.0
203
91
5
667
44
8
10
37
1.69
40285--40339
16
3.5
15
78
9
56
9
14
32
43
1.77
40670--40728
5
11.8
5
75
0
55
25
11
55
6
1.60
40670--40724
15
3.7
15
100
0
110
25
12
54
7
1.63
41561--41597
13
2.8
13
95
4
65
89
0
10
0
0.49
44718--44749
14
2.3
14
100
0
64
37
0
6
56
1.25
46474--46530
30
1.9
29
86
10
80
22
15
29
31
1.95
56683--56854
92
1.9
93
90
3
276
51
2
15
31
1.56
57700--58268
288
2.0
289
95
1
1034
50
3
11
34
1.57
58191--58223
14
2.4
14
90
5
50
45
3
9
42
1.51
58459--58485
2
13.5
2
100
0
54
51
0
0
48
1.00
59876--59913
19
2.0
20
89
5
60
28
2
2
65
1.19
60076--60284
66
3.1
67
78
8
221
34
8
20
36
1.82
60080--60311
22
10.4
23
70
9
124
36
8
18
36
1.82
60336--60477
22
6.5
21
74
13
108
35
6
18
39
1.76
60312--60477
66
2.5
65
78
8
165
37
7
17
37
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60316--60477
44
3.7
42
76
7
144
37
7
16
38
1.77
60584--60710
22
5.8
22
72
9
98
44
11
14
30
1.79
60814--61285
22
21.0
22
68
14
117
36
9
16
37
1.82
60814--60937
44
2.8
44
84
4
153
41
9
12
36
1.77
60972--61078
23
4.7
23
76
13
71
36
9
15
38
1.80
61243--61303
22
2.8
23
82
7
65
49
8
16
26
1.73
61460--61485
2
13.0
2
100
0
52
50
0
0
50
1.00
78054--78099
6
8.0
6
85
9
69
19
30
0
50
1.48
80326--80529
105
2.0
102
90
4
320
35
11
1
51
1.47
80482--80525
23
1.9
23
86
9
63
27
11
0
61
1.30
82148--82231
42
2.0
41
93
2
141
41
20
3
34
1.69
86899--86937
16
2.4
17
86
4
53
15
17
2
64
1.41
89990--90102
45
2.5
45
82
5
131
30
18
27
23
1.98
89990--90102
15
7.5
15
78
11
115
30
18
27
23
1.98
91905--91960
27
2.1
27
89
0
85
32
16
14
37
1.88
92596--92620
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!