Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016940.1 Corchorus olitorius cultivar O-4 contig16973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3166
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28


Found at i:1734 original size:13 final size:13

Alignment explanation


    Indices: 1702--1735  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

       1692 GCTCTTTGCT

                         
       1702 CACAGGATTCTGC
          1 CACAGGATTCTGC

              *          
       1715 CATAGGATTCTGC
          1 CACAGGATTCTGC

             *      
       1728 CGCAGGAT
          1 CACAGGAT

       1736 ACCATCGGCC


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24


Consensus pattern (13 bp):   
CACAGGATTCTGC
Done.