Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016948.1 Corchorus olitorius cultivar O-4 contig16981, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17529

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1281--1317
9
4.0
9
86
6
56
64
5
18
10
1.43
1278--1316
19
2.1
18
95
4
69
66
7
15
10
1.43
1596--1629
17
2.1
16
88
5
50
14
2
0
82
0.79
2449--2498
26
2.0
26
84
11
68
56
4
0
40
1.18
2593--2653
29
2.1
30
87
3
88
42
3
3
50
1.34
4718--4827
30
3.6
30
91
2
184
33
19
16
30
1.94
4861--4960
39
2.6
39
96
0
182
33
15
14
38
1.87
4884--4946
20
3.2
20
69
13
67
31
15
11
41
1.83
16118--16178
2
29.5
2
80
6
68
42
9
0
47
1.36
16426--16509
42
2.0
40
86
8
116
51
8
3
36
1.50
16500--16546
25
1.9
24
95
4
85
29
6
8
55
1.55

Tables:   1

The End!