Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016949.1 Corchorus olitorius cultivar O-4 contig16982, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2245
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Found at i:810 original size:23 final size:22

Alignment explanation


    Indices: 766--811  Score: 56
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        756 AATATTACCC

                        *   **    
        766 TAATTATTTTTGGCAACGATAA
          1 TAATTATTTTTGCCAAAAATAA

                                   
        788 TAATTATTTTTGCCAAAAAATAA
          1 TAATTATTTTTGCC-AAAAATAA

             
        811 T
          1 T

        812 TTTAAGCAAT


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  22   13  0.65
  23    7  0.35

ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41


Consensus pattern (22 bp):   
TAATTATTTTTGCCAAAAATAA

Found at i:824 original size:13 final size:13

Alignment explanation


    Indices: 806--830  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        796 TTTGCCAAAA

                         
        806 AATAATTTTAAGC
          1 AATAATTTTAAGC

                        
        819 AATAATTTTAAG
          1 AATAATTTTAAG

        831 GTGGTAAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40


Consensus pattern (13 bp):   
AATAATTTTAAGC
Done.