Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016954.1 Corchorus olitorius cultivar O-4 contig16987, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2868
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:2107 original size:2 final size:2

Alignment explanation


    Indices: 2100--2136  Score: 65
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       2090 CTTTAACTAG

                         *                                         
       2100 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       2137 TGTTGGTCCC


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51


Consensus pattern (2 bp):   
TA

Done.