Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016955.1 Corchorus olitorius cultivar O-4 contig16988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7514
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36


Found at i:1079 original size:17 final size:17

Alignment explanation


    Indices: 1057--1089  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1047 AATTTTATTA

                             
       1057 TTTTATTGTTTATTTAT
          1 TTTTATTGTTTATTTAT

                       *    
       1074 TTTTATTGTTTCTTTA
          1 TTTTATTGTTTATTTA

       1090 ATTCAAAAAC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76


Consensus pattern (17 bp):   
TTTTATTGTTTATTTAT

Found at i:1927 original size:22 final size:22

Alignment explanation


    Indices: 1899--1941  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1889 ATCTCCTAAC

                                   
       1899 TCAACC-TCTGGAGAGGTCGAAT
          1 TCAACCTTC-GGAGAGGTCGAAT

                      *          
       1921 TCAACCTTCGTAGAGGTCGAA
          1 TCAACCTTCGGAGAGGTCGAA

       1942 ACAACAACTT


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  22   17  0.89
  23    2  0.11

ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23


Consensus pattern (22 bp):   
TCAACCTTCGGAGAGGTCGAAT
Done.