Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016962.1 Corchorus olitorius cultivar O-4 contig16995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81018

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2999--3112
56
2.0
56
96
0
210
41
1
23
33
1.65
3298--3406
2
56.0
2
79
15
122
49
0
4
44
1.29
3290--3406
50
2.3
49
86
5
155
48
0
5
44
1.33
9854--9884
2
15.5
2
100
0
62
51
0
0
48
1.00
11059--11647
293
2.0
299
95
2
1073
29
16
15
38
1.90
12718--12811
45
2.2
43
84
7
120
38
19
5
37
1.74
14568--14594
13
2.1
13
100
0
54
18
22
22
37
1.95
15943--15967
12
2.1
12
100
0
50
92
0
0
8
0.40
16097--16135
2
19.5
2
94
0
69
51
2
0
46
1.14
20656--20730
23
3.2
22
71
14
78
49
8
24
18
1.74
20653--20745
48
1.9
48
93
0
159
44
9
24
21
1.82
25954--25978
13
1.9
13
100
0
50
44
0
0
56
0.99
26541--26590
26
1.9
26
84
8
66
62
4
10
24
1.44
26570--26643
32
2.3
32
80
11
80
70
5
4
20
1.24
28322--28521
100
2.0
100
98
0
382
43
13
10
32
1.78
29033--29075
15
2.9
15
83
10
52
53
0
2
44
1.13
29035--29076
9
4.7
9
77
11
50
54
0
2
42
1.13
29039--29089
24
2.1
24
85
0
66
49
0
5
45
1.26
35577--35614
3
12.7
3
100
0
76
34
0
0
65
0.93
41968--41993
9
2.9
9
100
0
52
23
0
53
23
1.46
47649--47714
21
3.1
21
80
6
62
46
19
15
18
1.83
53478--53537
23
2.7
21
76
19
59
70
10
13
6
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54667--54698
15
2.1
15
100
0
64
50
12
0
37
1.41
63084--63250
34
4.7
35
81
7
187
37
19
14
28
1.91
63265--63300
16
2.2
16
90
0
54
16
0
16
66
1.25
64554--64578
2
12.5
2
100
0
50
52
0
0
48
1.00
65698--65733
18
1.9
18
88
5
54
38
2
22
36
1.69
66333--66358
11
2.4
11
100
0
52
7
15
7
69
1.35
70043--70071
2
14.5
2
100
0
58
51
48
0
0
1.00
80963--80994
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!