Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016966.1 Corchorus olitorius cultivar O-4 contig16999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13730

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
160--261
51
2.0
49
81
12
118
21
22
13
42
1.88
2438--2473
2
18.0
2
100
0
72
50
0
0
50
1.00
3306--3339
6
5.7
6
100
0
68
17
0
32
50
1.47
4511--4538
13
2.2
13
100
0
56
46
0
14
39
1.44
8314--8346
13
2.6
13
95
4
59
36
24
6
33
1.80
8636--8987
175
2.0
175
90
2
555
34
6
23
35
1.80
9732--9762
15
2.1
15
93
0
53
45
0
41
12
1.42
12497--12527
15
2.1
15
93
0
53
45
0
41
12
1.42
12575--12637
28
2.4
27
81
7
76
26
12
14
46
1.80
12814--12845
12
2.5
13
90
10
57
28
6
25
40
1.79

Tables:   1

The End!