Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016969.1 Corchorus olitorius cultivar O-4 contig17002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24365
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:6082 original size:6 final size:6
Alignment explanation
Indices: 6071--6116 Score: 85
Period size: 6 Copynumber: 7.8 Consensus size: 6
6061 ATTGGTCAAG
6071 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA -CTAT
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTAT
6117 TTTAAAAAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 4 0.10
6 36 0.90
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (6 bp):
TCTATA
Found at i:7390 original size:22 final size:23
Alignment explanation
Indices: 7360--7406 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
7350 TTTTAGTTTA
*
7360 TAATATTCTTGGGTCATCCGGGT
1 TAATATTCTCGGGTCATCCGGGT
*
7383 TAAT-TTCTCGGGTCATTCGGGT
1 TAATATTCTCGGGTCATCCGGGT
7405 TA
1 TA
7407 CGGGTTTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.17, C:0.17, G:0.26, T:0.40
Consensus pattern (23 bp):
TAATATTCTCGGGTCATCCGGGT
Found at i:8828 original size:22 final size:22
Alignment explanation
Indices: 8798--8839 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8788 GTTTATAATA
*
8798 TTCTTGGGTCATCCGGGTTAAC
1 TTCTCGGGTCATCCGGGTTAAC
*
8820 TTCTCGGGTCATTCGGGTTA
1 TTCTCGGGTCATCCGGGTTA
8840 CGGGTTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.21, G:0.29, T:0.38
Consensus pattern (22 bp):
TTCTCGGGTCATCCGGGTTAAC
Found at i:11370 original size:223 final size:225
Alignment explanation
Indices: 10923--11370 Score: 819
Period size: 223 Copynumber: 2.0 Consensus size: 225
10913 ATATTATTTT
*
10923 TAGTTACCAGGGAAATTACTAAAAGGCCAAATTGAGAATTAATGTGGTGCCACCTTTTGGCTTTT
1 TAGTTACCAAGGAAATTACTAAAAGGCCAAATTGAGAATTAATGTGGTGCCACCTTTTGGCTTTT
*
10988 TTTTGGTCTTTTCTCACTTTTCGGATGACTAAAAAGCCCCTTTATGAGTTTCCCCCTTCCTTTTC
66 TTTTGGTCTTTTCTCACTTTTCGGATGACTAAAAAGCCCCTCTATGAGTTTCCCCCTTCCTTTTC
*
11053 CTACTACCCTTTTTTTGTAATTACTCATTTCCCTTCCTTAATTGCTTTTAATTGCTTTCAACTCC
131 CTACTACCCTTTTTTTGTAATTACCCATTTCCCTTCCTTAATTGCTTTTAATTGCTTTCAACTCC
*
11118 TAAGTGCTAATCAATCTTTAGGTTTGCCAA
196 TAAGTGCTAATCAATCTTCAGGTTTGCCAA
11148 TAGTTACCAAGGAAATTACTAAAAGGCCAAATTGAGAATTAATGTGGTGCCACCTTTTGGC-TTT
1 TAGTTACCAAGGAAATTACTAAAAGGCCAAATTGAGAATTAATGTGGTGCCACCTTTTGGCTTTT
*
11212 TTTTGGTCTTTTCTCACTTTTCGGATGACTAAAAAGCCCCTCTATGAGTTTTCCCCTTCCTTTTC
66 TTTTGGTCTTTTCTCACTTTTCGGATGACTAAAAAGCCCCTCTATGAGTTTCCCCCTTCCTTTTC
*
11277 CTACTACCC-TTTTTTGTAATTACCCATTTCCCTTCTTTAATTGCTTTTAATTGCTTTCAACTCC
131 CTACTACCCTTTTTTTGTAATTACCCATTTCCCTTCCTTAATTGCTTTTAATTGCTTTCAACTCC
*
11341 TCAGTGCTAATCAATCTTCAGGTTTGCCAA
196 TAAGTGCTAATCAATCTTCAGGTTTGCCAA
11371 AAATCAAACA
Statistics
Matches: 216, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
223 81 0.38
224 75 0.35
225 60 0.28
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (225 bp):
TAGTTACCAAGGAAATTACTAAAAGGCCAAATTGAGAATTAATGTGGTGCCACCTTTTGGCTTTT
TTTTGGTCTTTTCTCACTTTTCGGATGACTAAAAAGCCCCTCTATGAGTTTCCCCCTTCCTTTTC
CTACTACCCTTTTTTTGTAATTACCCATTTCCCTTCCTTAATTGCTTTTAATTGCTTTCAACTCC
TAAGTGCTAATCAATCTTCAGGTTTGCCAA
Found at i:11626 original size:33 final size:33
Alignment explanation
Indices: 11589--11671 Score: 130
Period size: 33 Copynumber: 2.5 Consensus size: 33
11579 AATTTCATTT
* * *
11589 TACCATTTTACACTTTTTTCTTTAATTACCAAA
1 TACCAATTTACTCTTTTTACTTTAATTACCAAA
*
11622 TACCAATTTACTCTTTTTACTTTAATTATCAAA
1 TACCAATTTACTCTTTTTACTTTAATTACCAAA
11655 TACCAATTTACTCTTTT
1 TACCAATTTACTCTTTT
11672 CACCAAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.49
Consensus pattern (33 bp):
TACCAATTTACTCTTTTTACTTTAATTACCAAA
Found at i:11713 original size:25 final size:25
Alignment explanation
Indices: 11652--11701 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
11642 TTTAATTATC
* *
11652 AAATACCAATTTACTCTTTTCACCA
1 AAATACTATTTTACTCTTTTCACCA
*
11677 AAATACTATTTTACTCTTTTTACCA
1 AAATACTATTTTACTCTTTTCACCA
11702 TATTACTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.24, G:0.00, T:0.42
Consensus pattern (25 bp):
AAATACTATTTTACTCTTTTCACCA
Found at i:11734 original size:33 final size:33
Alignment explanation
Indices: 11697--11763 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
11687 TTACTCTTTT
* * *
11697 TACCATATTACTCTTTTTACTTTGATTACTAAA
1 TACCATATTACTCATTTTACTTTAATTACCAAA
11730 TACCATATTACTCATTTTACTTTAATTACCAAA
1 TACCATATTACTCATTTTACTTTAATTACCAAA
11763 T
1 T
11764 TTCATTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.01, T:0.46
Consensus pattern (33 bp):
TACCATATTACTCATTTTACTTTAATTACCAAA
Found at i:11848 original size:26 final size:26
Alignment explanation
Indices: 11819--11875 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
11809 TACTCCTTTT
*
11819 TCTTTAATTACCATATTCCATATTAC
1 TCTTTAATTACCAAATTCCATATTAC
* * * *
11845 TCTTTTATTATCAAATTTCATTTTAC
1 TCTTTAATTACCAAATTCCATATTAC
11871 TCTTT
1 TCTTT
11876 TTTAAATACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.54
Consensus pattern (26 bp):
TCTTTAATTACCAAATTCCATATTAC
Found at i:11868 original size:59 final size:59
Alignment explanation
Indices: 11795--11991 Score: 219
Period size: 59 Copynumber: 3.3 Consensus size: 59
11785 TACCTTAATC
11795 ATCAAATTCAATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATT
1 ATCAAATTCAATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATT
* * ** *
11854 ATCAAATTTC-ATTTTACTCTTTTTTAAATACTTTAATTACCA-AGTTTCAT-TT--T-TAATCT
1 ATCAAA-TTCAATTTTACTC-CTTTT---T-CTTTAATTACCATA-TTCCATATTACTCTTTTAT
11913 T
59 T
*
11914 ATCAAATTCTATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATT
1 ATCAAATTCAATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATT
11973 ATCAAATTTC-ATTTTACTC
1 ATCAAA-TTCAATTTTACTC
11992 TTCTTTAAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 28
0.75 0.07 0.18
Matches are distributed among these distances:
55 17 0.15
56 4 0.04
58 1 0.01
59 41 0.36
60 29 0.25
61 1 0.01
63 4 0.04
64 17 0.15
ACGTcount: A:0.28, C:0.19, G:0.01, T:0.53
Consensus pattern (59 bp):
ATCAAATTCAATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATT
Found at i:11928 original size:119 final size:119
Alignment explanation
Indices: 11795--12026 Score: 446
Period size: 119 Copynumber: 1.9 Consensus size: 119
11785 TACCTTAATC
11795 ATCAAATTCAATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAA
1 ATCAAATTCAATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAA
*
11860 TTTCATTTTACTCTTTTTTAAATACTTTAATTACCAAGTTTCATTTTTAATCTT
66 TTTCATTTTACTCTTCTTTAAATACTTTAATTACCAAGTTTCATTTTTAATCTT
*
11914 ATCAAATTCTATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAA
1 ATCAAATTCAATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAA
11979 TTTCATTTTACTCTTCTTTAAATACTTTAATTACCAAGTTTCATTTTT
66 TTTCATTTTACTCTTCTTTAAATACTTTAATTACCAAGTTTCATTTTT
12027 TTACCAAAAT
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 111 1.00
ACGTcount: A:0.28, C:0.18, G:0.01, T:0.53
Consensus pattern (119 bp):
ATCAAATTCAATTTTACTCCTTTTTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAA
TTTCATTTTACTCTTCTTTAAATACTTTAATTACCAAGTTTCATTTTTAATCTT
Found at i:11973 original size:26 final size:26
Alignment explanation
Indices: 11938--11993 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
11928 TACTCCTTTT
*
11938 TCTTTAATTACCATATTCCATATTAC
1 TCTTTAATTACCAAATTCCATATTAC
* * * *
11964 TCTTTTATTATCAAATTTCATTTTAC
1 TCTTTAATTACCAAATTCCATATTAC
11990 TCTT
1 TCTT
11994 CTTTAAATAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.00, T:0.54
Consensus pattern (26 bp):
TCTTTAATTACCAAATTCCATATTAC
Found at i:11996 original size:55 final size:55
Alignment explanation
Indices: 11818--11999 Score: 190
Period size: 55 Copynumber: 3.1 Consensus size: 55
11808 TTACTCCTTT
11818 TTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAATTTCATTTTACTC
1 TTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAATTTCATTTTACTC
* * ** *
11873 TTTTTTAAATACTTTAATTACCA-AGTTTCAT-TTTTAATCTTATCAAA-TTCTATTTTACTCC
1 TTCTTTAATTACCAT-ATT-CCATA-TTAC-TCTTTT-A--TTATCAAATTTC-ATTTTACT-C
11934 TTTTTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAATTTCATTTTACTC
1 ---TTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAATTTCATTTTACTC
11992 TTCTTTAA
1 TTCTTTAA
12000 ATACTTTAAT
Statistics
Matches: 102, Mismatches: 10, Indels: 30
0.72 0.07 0.21
Matches are distributed among these distances:
55 19 0.19
56 4 0.04
57 10 0.10
58 3 0.03
59 19 0.19
60 19 0.19
61 3 0.03
62 10 0.10
63 4 0.04
64 11 0.11
ACGTcount: A:0.27, C:0.18, G:0.01, T:0.54
Consensus pattern (55 bp):
TTCTTTAATTACCATATTCCATATTACTCTTTTATTATCAAATTTCATTTTACTC
Found at i:12084 original size:26 final size:27
Alignment explanation
Indices: 12052--12234 Score: 148
Period size: 26 Copynumber: 6.7 Consensus size: 27
12042 TTAACCTTAG
12052 TTACCAAATTT-ATTTTTACTCTTTAA
1 TTACCAAATTTCATTTTTACTCTTTAA
*
12078 TTACCAAATTTCATTTTTCTCTTTTTACTTTAA
1 TTACCAAATTTCATTTTT-AC----T-CTTTAA
** *
12111 TTACCAAATACCA-ATTTACTCTTT--
1 TTACCAAATTTCATTTTTACTCTTTAA
** *
12135 TTACCAAAATACCA-TTTTAC-C-TTAG
1 TTACC-AAATTTCATTTTTACTCTTTAA
12160 TTACCAAATTTCATTTTTACTTTAACTTTAA
1 TTACCAAATTTCATTTTTAC--T--CTTTAA
12191 TTACCAAATTTCA-TTTTACTCTTTAA
1 TTACCAAATTTCATTTTTACTCTTTAA
12217 TTACCAAATTTCATTTTT
1 TTACCAAATTTCATTTTT
12235 TACCAAATAC
Statistics
Matches: 130, Mismatches: 9, Indels: 35
0.75 0.05 0.20
Matches are distributed among these distances:
23 2 0.02
24 12 0.09
25 24 0.18
26 34 0.26
27 11 0.08
28 2 0.02
30 7 0.05
31 17 0.13
32 4 0.03
33 17 0.13
ACGTcount: A:0.31, C:0.19, G:0.01, T:0.50
Consensus pattern (27 bp):
TTACCAAATTTCATTTTTACTCTTTAA
Found at i:12112 original size:33 final size:33
Alignment explanation
Indices: 12072--12138 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
12062 TATTTTTACT
** * *
12072 CTTTAATTACCAAATTTCATTTTTCTCTTTTTA
1 CTTTAATTACCAAATACCAATTTACTCTTTTTA
12105 CTTTAATTACCAAATACCAATTTACTCTTTTTA
1 CTTTAATTACCAAATACCAATTTACTCTTTTTA
12138 C
1 C
12139 CAAAATACCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.51
Consensus pattern (33 bp):
CTTTAATTACCAAATACCAATTTACTCTTTTTA
Found at i:12198 original size:31 final size:27
Alignment explanation
Indices: 12105--12234 Score: 112
Period size: 25 Copynumber: 4.9 Consensus size: 27
12095 TCTCTTTTTA
** *
12105 CTTTAATTACCAAATACCA-ATTTACT
1 CTTTAATTACCAAATTTCATTTTTACT
**
12131 CTTT--TTACCAAAATACCA-TTTTAC-
1 CTTTAATTACC-AAATTTCATTTTTACT
*
12155 C-TTAGTTACCAAATTTCATTTTTACTTT
1 CTTTAATTACCAAATTTCATTTTTAC--T
12183 AACTTTAATTACCAAATTTCA-TTTTACT
1 --CTTTAATTACCAAATTTCATTTTTACT
12211 CTTTAATTACCAAATTTCATTTTT
1 CTTTAATTACCAAATTTCATTTTT
12235 TACCAAATAC
Statistics
Matches: 89, Mismatches: 4, Indels: 21
0.78 0.04 0.18
Matches are distributed among these distances:
23 2 0.02
24 12 0.13
25 24 0.27
26 23 0.26
27 4 0.04
28 1 0.01
30 7 0.08
31 16 0.18
ACGTcount: A:0.32, C:0.20, G:0.01, T:0.47
Consensus pattern (27 bp):
CTTTAATTACCAAATTTCATTTTTACT
Found at i:12237 original size:108 final size:105
Alignment explanation
Indices: 11960--12307 Score: 348
Period size: 108 Copynumber: 3.3 Consensus size: 105
11950 ATATTCCATA
* * * * * * *
11960 TTACTCTTTTATTATCAAATTTCATTTTACTCTT-CTTTAAATACTTTAATTACCAAGTTT-CAT
1 TTACTCTTTAATTACCAAATTTCATTTTTCACTTACTTTAATTAC--CAAATACCAA-TTTAC-T
*
12023 TTTTTTACCAAAATACCATTTAACCTTAGTTACCAAATTTATTT
62 CTTTTTACCAAAATACCATTTAACCTTAGTTACCAAATTTATTT
*
12067 TTACTCTTTAATTACCAAATTTCATTTTTCTCTTTTTACTTTAATTACCAAATACCAATTTACTC
1 TTACTCTTTAATTACCAAATTTCATTTTTCAC---TTACTTTAATTACCAAATACCAATTTACTC
*
12132 TTTTTACCAAAATACCATTTTACCTTAGTTACCAAATTTCATTT
63 TTTTTACCAAAATACCATTTAACCTTAGTTACCAAATTT-ATTT
*
12176 TTACTTTAACTTTAATTACCAAATTTCA-TTTT-AC-T-CTTTAATTACCAAAT-----TTCA-T
1 TTAC--T--CTTTAATTACCAAATTTCATTTTTCACTTACTTTAATTACCAAATACCAATTTACT
* *
12231 -TTTTTACC-AAATACCGTTTAACCTTAGTTACCAAAATTTCATCT
62 CTTTTTACCAAAATACCATTTAACCTTAGTTACC-AAATTT-ATTT
12275 TTACTCTTTAATTACCAAATTTCATTTTT-ACTT
1 TTACTCTTTAATTACCAAATTTCATTTTTCACTT
12308 TACCTTTTTT
Statistics
Matches: 215, Mismatches: 13, Indels: 36
0.81 0.05 0.14
Matches are distributed among these distances:
95 19 0.09
96 6 0.03
97 2 0.01
98 22 0.10
99 22 0.10
100 1 0.00
101 3 0.01
106 15 0.07
107 30 0.14
108 42 0.20
109 17 0.08
110 2 0.01
111 11 0.05
112 4 0.02
113 19 0.09
ACGTcount: A:0.31, C:0.20, G:0.01, T:0.48
Consensus pattern (105 bp):
TTACTCTTTAATTACCAAATTTCATTTTTCACTTACTTTAATTACCAAATACCAATTTACTCTTT
TTACCAAAATACCATTTAACCTTAGTTACCAAATTTATTT
Found at i:14965 original size:11 final size:10
Alignment explanation
Indices: 14945--14986 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
14935 TACCCTTATC
14945 TTTTTATTTT
1 TTTTTATTTT
*
14955 TTGTTATTTT
1 TTTTTATTTT
14965 TCTTTTATTTT
1 T-TTTTATTTT
*
14976 TGTTTATTTT
1 TTTTTATTTT
14986 T
1 T
14987 CTTAGTTACT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 19 0.68
11 9 0.32
ACGTcount: A:0.10, C:0.02, G:0.05, T:0.83
Consensus pattern (10 bp):
TTTTTATTTT
Found at i:14977 original size:20 final size:22
Alignment explanation
Indices: 14946--14989 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
14936 ACCCTTATCT
14946 TTTTATTTTTTG-TTATTTTTC
1 TTTTATTTTTTGTTTATTTTTC
14967 TTTTA-TTTTTGTTTATTTTTC
1 TTTTATTTTTTGTTTATTTTTC
14988 TT
1 TT
14990 AGTTACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.09, C:0.05, G:0.05, T:0.82
Consensus pattern (22 bp):
TTTTATTTTTTGTTTATTTTTC
Found at i:16159 original size:21 final size:21
Alignment explanation
Indices: 16120--16168 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
16110 TCAATGCTTT
**
16120 AGGAATGCAAGAGGGATTTCAA
1 AGGAA-GCAAGAGCCATTTCAA
*
16142 AGGAAGCAAGAGCCATTTCCA
1 AGGAAGCAAGAGCCATTTCAA
16163 A-GAAGC
1 AGGAAGC
16169 TACAATTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 5 0.21
21 14 0.58
22 5 0.21
ACGTcount: A:0.41, C:0.16, G:0.29, T:0.14
Consensus pattern (21 bp):
AGGAAGCAAGAGCCATTTCAA
Found at i:20574 original size:19 final size:18
Alignment explanation
Indices: 20541--20576 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
20531 TTGAAATTAT
20541 TCTTCAATGGTCTTCAAA
1 TCTTCAATGGTCTTCAAA
*
20559 TCTTCAAATTGTCTTCAA
1 TCTTC-AATGGTCTTCAA
20577 TAAATCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (18 bp):
TCTTCAATGGTCTTCAAA
Done.