Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016976.1 Corchorus olitorius cultivar O-4 contig17009, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8704
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:1267 original size:25 final size:26

Alignment explanation


    Indices: 1239--1293  Score: 85
    Period size: 25  Copynumber: 2.2  Consensus size: 26

       1229 TCTAACATGA

                      * *             
       1239 TTTCCTTTTTGCGTTTTTC-TTTCTT
          1 TTTCCTTTTTCCCTTTTTCTTTTCTT

                                      
       1264 TTTCCTTTTTCCCTTTTTCTTTTCTT
          1 TTTCCTTTTTCCCTTTTTCTTTTCTT

                
       1290 TTTC
          1 TTTC

       1294 GGTACTTCCG


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  25   17  0.63
  26   10  0.37

ACGTcount: A:0.00, C:0.24, G:0.04, T:0.73


Consensus pattern (26 bp):   
TTTCCTTTTTCCCTTTTTCTTTTCTT

Done.