Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016980.1 Corchorus olitorius cultivar O-4 contig17013, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97409

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2207--2250
20
2.2
20
84
8
54
70
11
9
9
1.34
4931--4966
19
1.9
18
88
5
54
27
22
8
41
1.82
5402--5431
15
2.0
15
93
0
51
43
13
13
30
1.82
6185--6250
33
2.0
33
100
0
132
60
12
3
24
1.46
6521--6579
30
2.0
30
90
6
93
61
5
11
22
1.50
6862--6908
20
2.3
20
96
0
85
38
21
10
29
1.87
7424--7450
6
4.5
6
100
0
54
70
0
0
29
0.88
11722--11757
19
1.9
18
88
5
54
27
22
8
41
1.82
12450--12530
30
2.7
31
75
17
82
28
34
0
37
1.58
16418--16466
21
2.3
21
83
10
64
18
10
6
65
1.43
17661--17691
16
1.9
16
93
0
53
74
3
6
16
1.16
23800--23880
30
2.7
29
73
21
69
28
35
0
35
1.58
27006--27034
2
14.5
2
100
0
58
48
0
0
51
1.00
31310--31334
11
2.3
11
100
0
50
84
0
16
0
0.63
31446--31669
39
5.8
38
73
5
153
26
18
19
35
1.95
31456--31712
78
3.3
78
76
8
229
25
19
19
35
1.95
31458--31710
117
2.2
116
81
5
296
26
19
19
35
1.95
32417--32515
23
4.5
23
77
12
109
12
18
13
56
1.67
32430--32497
18
3.5
18
80
18
73
13
14
11
60
1.60
32431--32511
41
2.0
41
95
0
144
11
18
12
58
1.63
33670--33707
19
2.0
19
94
0
67
57
18
7
15
1.62
33734--33779
17
2.8
17
90
6
69
45
34
4
15
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39255--39287
2
16.5
2
100
0
66
48
0
0
51
1.00
40363--40419
22
2.8
19
78
17
60
43
1
0
54
1.10
40369--40428
22
2.7
23
76
7
61
45
5
0
50
1.23
45962--46014
27
2.1
26
82
10
65
30
16
15
37
1.90
54864--55021
76
2.1
76
84
2
192
14
27
35
22
1.93
54921--55129
110
1.9
110
84
2
276
15
23
35
24
1.94
60658--60699
22
1.9
22
90
0
66
9
14
47
28
1.75
69113--69138
11
2.4
11
100
0
52
7
15
7
69
1.35
69897--69936
15
2.6
16
96
4
73
15
7
10
67
1.41
75011--75045
17
2.2
16
90
10
54
22
2
5
68
1.24
75835--75895
16
3.8
16
84
4
86
40
39
13
6
1.70
79195--79243
5
9.4
5
79
16
55
4
18
0
77
0.92
79195--79243
11
4.7
10
78
16
55
4
18
0
77
0.92
79262--79301
12
3.1
14
86
13
52
0
17
0
82
0.67
80822--80869
15
3.1
16
82
11
55
43
37
12
6
1.68
81840--81892
22
2.5
22
81
9
65
50
0
0
49
1.00
82401--82493
41
2.3
41
92
0
150
47
16
0
36
1.47
87352--87429
15
5.2
15
73
11
79
11
28
23
37
1.89
87350--87429
30
2.7
30
96
0
142
12
27
22
37
1.90
88497--88535
15
2.6
15
87
0
51
12
25
28
33
1.93
88666--88731
18
3.7
18
84
8
80
12
24
39
24
1.89
88670--88738
18
3.8
19
78
17
67
10
23
39
27
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89288--89418
50
2.7
47
81
10
147
51
6
15
26
1.66
89311--89418
50
2.2
49
85
8
148
51
5
16
25
1.66

Tables:   1

The End!