Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016984.1 Corchorus olitorius cultivar O-4 contig17017, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16458
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:4597 original size:4 final size:4

Alignment explanation


    Indices: 4590--4616  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

       4580 TTTGAAAAAA

                                             
       4590 AATT AATT AATT AATT AATT AATT AAT
          1 AATT AATT AATT AATT AATT AATT AAT

       4617 AAAAAAAAGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (4 bp):   
AATT

Done.