Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016985.1 Corchorus olitorius cultivar O-4 contig17018, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39761

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1022--1084
28
2.2
29
83
10
78
28
19
15
36
1.92
3788--3841
23
2.4
23
81
6
67
48
7
0
44
1.31
3836--3898
32
2.0
32
93
0
108
53
4
12
28
1.58
9692--9779
19
4.3
22
85
12
93
39
3
3
53
1.34
9713--9778
19
3.5
19
100
0
132
36
4
4
54
1.41
11483--11634
76
2.0
75
81
7
173
17
30
28
23
1.97
12534--12583
26
1.9
26
87
0
73
16
20
10
54
1.70
14877--14910
16
2.1
16
88
5
50
44
5
17
32
1.73
19387--19435
21
2.3
21
82
6
55
14
28
16
40
1.87
20517--20574
10
6.4
9
74
21
50
75
5
8
10
1.17
20531--20568
16
2.3
17
86
4
51
81
2
7
7
0.96
37252--37285
17
2.0
17
94
0
59
17
8
5
67
1.37

Tables:   1

The End!