Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016986.1 Corchorus olitorius cultivar O-4 contig17019, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3080
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:885 original size:8 final size:8

Alignment explanation


    Indices: 872--904  Score: 66
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        862 GAGTTTATAA

                    
        872 CATTGATT
          1 CATTGATT

                    
        880 CATTGATT
          1 CATTGATT

                    
        888 CATTGATT
          1 CATTGATT

                    
        896 CATTGATT
          1 CATTGATT

             
        904 C
          1 C

        905 CATGTATAAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   25  1.00

ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48


Consensus pattern (8 bp):   
CATTGATT

Found at i:1067 original size:19 final size:18

Alignment explanation


    Indices: 1022--1058  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       1012 CTCTCTCTTT

                               
       1022 TTCTCTCTCCAAGTTTTTA
          1 TTCTCT-TCCAAGTTTTTA

                              
       1041 TTCTTCTTCCAAGTTTTT
          1 TTC-TCTTCCAAGTTTTT

       1059 TGTACTCTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  19   14  0.82
  20    3  0.18

ACGTcount: A:0.14, C:0.24, G:0.05, T:0.57


Consensus pattern (18 bp):   
TTCTCTTCCAAGTTTTTA
Done.