Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016994.1 Corchorus olitorius cultivar O-4 contig17027, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1055
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40


Found at i:473 original size:13 final size:12

Alignment explanation


    Indices: 453--486  Score: 50
    Period size: 13  Copynumber: 2.8  Consensus size: 12

        443 AAAAAGTAAT

                        
        453 AATACTATTATA
          1 AATACTATTATA

                        *
        465 AATTACTATTATT
          1 AA-TACTATTATA

                     
        478 AATACTATT
          1 AATACTATT

        487 TCAATGTCTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  12    9  0.45
  13   11  0.55

ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47


Consensus pattern (12 bp):   
AATACTATTATA
Done.