Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016995.1 Corchorus olitorius cultivar O-4 contig17028, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95640

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
551--585
13
2.8
12
83
8
52
37
8
2
51
1.47
4799--4863
29
2.2
30
86
2
87
47
13
16
21
1.82
8145--8204
30
2.0
30
86
0
84
26
20
11
41
1.86
17542--17655
60
1.9
60
87
3
167
38
14
15
30
1.88
17824--17887
27
2.4
27
97
0
119
42
15
10
31
1.82
26191--26224
13
2.6
13
86
13
52
55
2
2
38
1.30
26235--26391
84
1.9
83
86
4
226
50
2
8
38
1.47
35454--35480
14
1.9
14
100
0
54
22
3
7
66
1.33
37577--37628
23
2.3
23
83
3
70
21
23
5
50
1.70
37900--37925
12
2.2
12
100
0
52
57
0
7
34
1.27
53527--53558
2
17.0
2
87
12
50
50
0
0
50
1.00
60476--60505
15
1.9
16
93
6
53
40
13
20
26
1.89
60980--61004
9
2.8
9
100
0
50
36
32
0
32
1.58
68355--68405
1
51.0
1
88
0
75
94
5
0
0
0.32
68357--68405
19
2.6
19
93
0
89
93
6
0
0
0.33
71179--71255
38
2.0
38
94
0
136
45
9
3
41
1.54
71239--71276
11
3.5
11
89
10
51
42
0
0
57
0.98
71778--72038
135
1.9
135
92
1
443
44
8
13
33
1.75
71980--72095
57
2.0
57
91
0
187
42
12
19
25
1.86
73593--73963
107
3.5
107
94
1
622
40
8
9
41
1.68
82860--82933
30
2.5
30
97
0
139
39
28
20
12
1.88
86369--86397
14
2.1
14
100
0
58
75
0
24
0
0.80

Tables:   1

The End!