Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016997.1 Corchorus olitorius cultivar O-4 contig17030, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3448
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35


Found at i:929 original size:32 final size:32

Alignment explanation


    Indices: 866--931  Score: 80
    Period size: 32  Copynumber: 2.1  Consensus size: 32

        856 CGCCCGAATT

                             *      *       
        866 TTAAAAAGGCTTGGACATGTGTTTTAAGCCCG
          1 TTAAAAAGGCTTGGACAAGTGTTTCAAGCCCG

                  *                    *     
        898 TTAAAAGGGCTTGGACAAGAT-TTTCAGGCCCG
          1 TTAAAAAGGCTTGGACAAG-TGTTTCAAGCCCG

              
        930 TT
          1 TT

        932 TTAAAAATGG


Statistics
Matches: 29,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  32   28  0.97
  33    1  0.03

ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30


Consensus pattern (32 bp):   
TTAAAAAGGCTTGGACAAGTGTTTCAAGCCCG
Done.