Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000170.1 Corchorus olitorius cultivar O-4 contig00170, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 611

Length: 1019
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22


Found at i:722 original size:17 final size:16

Alignment explanation


    Indices: 690--727  Score: 60
    Period size: 17  Copynumber: 2.4  Consensus size: 16

        680 TAAACTAGTC

                            
        690 TATA-ATCTATATCTA
          1 TATATATCTATATCTA

                             
        705 TATATATCTATATACTA
          1 TATATATCTATAT-CTA

                  
        722 TATATA
          1 TATATA

        728 GGACGTGGGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  15    4  0.19
  16    8  0.38
  17    9  0.43

ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47


Consensus pattern (16 bp):   
TATATATCTATATCTA
Done.