Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017009.1 Corchorus olitorius cultivar O-4 contig17042, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8934
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:2617 original size:27 final size:27

Alignment explanation


    Indices: 2586--2704  Score: 202
    Period size: 27  Copynumber: 4.4  Consensus size: 27

       2576 GCTGCTGTTA

                       **              
       2586 GCGGCCTTGCGGGCTGCTGGTGCTGGG
          1 GCGGCCTTGCGAACTGCTGGTGCTGGG

                                       
       2613 GCGGCCTTGCGAACTGCTGGTGCTGGG
          1 GCGGCCTTGCGAACTGCTGGTGCTGGG

                                  *    
       2640 GCGGCCTTGCGAACTGCTGGTGTTGGG
          1 GCGGCCTTGCGAACTGCTGGTGCTGGG

                *                      
       2667 GCGGTCTTGCGAACTGCTGGTGCTGGG
          1 GCGGCCTTGCGAACTGCTGGTGCTGGG

                       
       2694 GCGGCCTTGCG
          1 GCGGCCTTGCG

       2705 GAGCAGCCTT


Statistics
Matches: 86,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   86  1.00

ACGTcount: A:0.05, C:0.25, G:0.46, T:0.24


Consensus pattern (27 bp):   
GCGGCCTTGCGAACTGCTGGTGCTGGG

Done.