Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017011.1 Corchorus olitorius cultivar O-4 contig17044, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40919

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4938--5009
25
2.9
25
100
0
144
40
8
19
31
1.81
5065--5115
26
2.0
26
96
0
93
56
13
17
11
1.66
5191--5263
26
2.7
27
78
4
85
41
24
15
19
1.89
8807--9042
41
5.7
41
75
12
203
25
7
24
42
1.80
8839--9084
43
5.8
41
77
8
203
26
8
23
41
1.83
8796--9084
84
3.4
84
83
5
343
25
8
23
42
1.83
10578--10664
30
3.0
28
81
10
77
40
11
22
25
1.88
12568--12601
17
2.0
17
100
0
68
41
11
35
11
1.78
16290--16322
15
2.2
15
100
0
66
54
27
0
18
1.44
16981--17028
19
2.6
20
75
21
59
22
8
12
56
1.63
27788--27873
45
2.0
43
90
6
138
38
24
5
31
1.79
35433--35458
11
2.4
11
100
0
52
92
0
0
7
0.39

Tables:   1

The End!