Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017012.1 Corchorus olitorius cultivar O-4 contig17045, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37564

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2048--2105
30
1.9
30
96
0
107
13
32
5
48
1.65
2790--2864
36
2.1
33
80
14
78
30
5
30
33
1.80
2993--3020
14
2.0
14
100
0
56
28
14
14
42
1.84
4702--4737
12
2.8
13
87
8
56
0
13
0
86
0.58
5038--5102
31
2.2
31
88
5
98
38
12
21
27
1.89
12357--12406
6
8.7
6
80
14
61
0
2
16
82
0.77
12365--12406
11
3.8
11
93
0
75
0
2
16
80
0.81
14683--14755
30
2.4
30
86
0
110
17
34
9
38
1.83
16997--17037
20
2.0
20
90
9
66
65
14
12
7
1.45
17642--17684
15
2.9
15
86
10
61
41
2
0
55
1.12
17475--17671
109
1.8
106
88
5
297
42
10
3
44
1.53
17658--17707
21
2.5
19
81
15
57
36
0
8
56
1.29
18982--19023
22
1.9
22
90
0
66
38
11
7
42
1.69
20420--20478
29
2.0
29
90
6
93
32
6
27
33
1.83
20528--20557
2
15.0
2
100
0
60
50
0
0
50
1.00
28434--28529
34
2.8
34
91
1
147
6
36
39
17
1.75
33905--33940
19
1.9
18
88
5
54
27
22
8
41
1.82

Tables:   1

The End!