Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017013.1 Corchorus olitorius cultivar O-4 contig17046, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6031
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28


Found at i:596 original size:28 final size:28

Alignment explanation


    Indices: 531--605  Score: 93
    Period size: 28  Copynumber: 2.8  Consensus size: 28

        521 AAGTGAGCTT

                                        
        531 AAAATGACCAAAATG-CCCT-TAGTGTA
          1 AAAATGACCAAAATGCCCCTGTAGTGTA

                *                  *     
        557 AAAACGACCAAAATGCCCCTGTAAT-TGA
          1 AAAATGACCAAAATGCCCCTGTAGTGT-A

                         *       
        585 AAAATGACCAAAAAGCCCCTG
          1 AAAATGACCAAAATGCCCCTG

        606 AATGACCTTA


Statistics
Matches: 42,  Mismatches: 4, Indels: 4
        0.84            0.08        0.08

Matches are distributed among these distances:
  26   14  0.33
  27    5  0.12
  28   23  0.55

ACGTcount: A:0.44, C:0.24, G:0.15, T:0.17


Consensus pattern (28 bp):   
AAAATGACCAAAATGCCCCTGTAGTGTA
Done.