Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017015.1 Corchorus olitorius cultivar O-4 contig17048, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8251
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:1640 original size:21 final size:21

Alignment explanation


    Indices: 1614--1663  Score: 75
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1604 AGGGATCGAG

                          *       
       1614 CTGGGCGCTGA-GCCTTGTCGC
          1 CTGGGCGCTGAGGCATT-TCGC

                                 
       1635 CTGGGCGCTGAGGCATTTCGC
          1 CTGGGCGCTGAGGCATTTCGC

                    
       1656 CTGGGCGC
          1 CTGGGCGC

       1664 CCAGCGGCAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  21   23  0.85
  22    4  0.15

ACGTcount: A:0.06, C:0.32, G:0.40, T:0.22


Consensus pattern (21 bp):   
CTGGGCGCTGAGGCATTTCGC

Found at i:7831 original size:11 final size:11

Alignment explanation


    Indices: 7815--7840  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       7805 GACAGCATAA

                       
       7815 GCGACATACTT
          1 GCGACATACTT

                       
       7826 GCGACATACTT
          1 GCGACATACTT

                
       7837 GCGA
          1 GCGA

       7841 TAAAATTGTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23


Consensus pattern (11 bp):   
GCGACATACTT
Done.