Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017016.1 Corchorus olitorius cultivar O-4 contig17049, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70542

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8689--8724
19
1.9
18
88
5
54
27
22
8
41
1.82
20946--21007
30
2.1
30
96
0
115
45
0
8
46
1.32
25131--25172
19
2.2
19
86
0
57
23
0
2
73
0.94
26889--26930
22
1.9
22
85
0
57
38
26
21
14
1.91
27817--28013
105
1.9
103
89
4
306
53
2
11
32
1.48
28385--28427
23
2.0
21
86
9
59
9
20
4
65
1.40
30931--30997
29
2.3
29
100
0
134
17
22
53
5
1.65
32041--32230
39
4.9
38
83
8
240
31
16
17
34
1.93
32041--32230
77
2.4
77
86
6
249
31
16
17
34
1.93
34303--34345
12
3.8
12
87
9
63
13
0
16
69
1.19
36533--36557
12
2.1
12
100
0
50
84
0
16
0
0.63
36726--36769
10
4.1
10
78
16
52
86
0
9
4
0.70
36725--36767
11
3.8
11
81
6
59
88
0
6
4
0.63
36727--36765
20
1.9
20
94
5
69
87
0
7
5
0.68
36725--36767
23
1.9
22
95
4
77
88
0
6
4
0.63
40278--40313
15
2.3
15
90
4
54
19
13
8
58
1.61
40678--40724
22
2.1
22
88
0
67
51
4
14
29
1.62
49897--49979
42
2.0
43
88
7
125
22
19
22
34
1.96
49967--50009
20
2.1
21
86
4
61
39
20
18
20
1.93
50469--50499
12
2.6
12
94
0
53
48
32
19
0
1.49
65556--65639
44
2.0
42
90
0
114
27
21
5
45
1.75
67212--67246
2
17.5
2
100
0
70
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70459--70515
25
2.2
25
93
3
96
15
17
10
56
1.67

Tables:   1

The End!