Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017017.1 Corchorus olitorius cultivar O-4 contig17050, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46303

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
674--719
7
6.4
7
87
5
65
82
2
13
2
0.85
2081--2112
16
2.0
16
93
0
55
9
25
21
43
1.82
2653--2724
31
2.3
31
77
13
85
27
4
6
61
1.41
3474--3559
16
5.4
16
78
13
88
38
40
15
5
1.71
3474--3559
32
2.7
32
92
3
138
38
40
15
5
1.71
5027--5116
44
2.0
44
93
0
153
24
22
8
44
1.81
6017--6346
178
1.9
178
88
2
502
34
13
16
36
1.87
14758--14821
33
2.0
33
87
9
96
28
9
12
50
1.71
19473--19506
14
2.5
13
86
13
50
61
5
14
17
1.52
19458--19531
37
2.0
37
86
2
105
63
8
9
18
1.49
19485--19581
51
1.9
50
87
2
140
56
10
10
22
1.63
19572--19667
50
1.9
50
85
4
131
55
11
11
21
1.67
19535--19617
36
2.3
36
85
4
114
59
10
9
20
1.59
19409--19680
86
3.2
86
95
1
490
57
11
9
22
1.61
19572--19678
50
2.1
50
82
3
126
56
11
11
21
1.65
21890--21920
13
2.4
13
100
0
62
41
22
22
12
1.88
22790--22828
2
20.0
2
94
5
71
51
0
0
48
1.00
22787--22827
19
2.1
19
90
4
64
53
0
0
46
1.00
22980--23012
13
2.5
13
100
0
66
0
15
30
54
1.41
24479--24525
20
2.3
20
85
3
58
27
14
4
53
1.60
24557--24618
32
1.9
32
83
6
81
20
27
0
51
1.48
24708--24803
26
3.6
26
71
19
81
29
21
1
47
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24772--24896
34
3.9
34
69
18
115
28
20
3
47
1.66
24800--24859
25
2.4
25
77
2
66
28
20
5
46
1.71
24859--25153
25
11.4
26
64
14
135
34
20
0
45
1.54
24845--25155
52
6.0
52
98
0
595
34
19
0
45
1.54
24786--25155
104
3.5
104
94
2
623
32
20
1
45
1.58
24786--25155
156
2.3
157
93
3
625
32
20
1
45
1.58
25108--25247
34
4.2
34
89
3
207
32
20
1
45
1.60
25163--25264
30
3.2
30
82
10
107
26
19
3
50
1.65
28123--28155
9
3.7
9
100
0
66
78
0
21
0
0.75
30128--30181
28
2.0
27
81
3
63
22
12
16
48
1.80
32174--32215
13
3.2
13
83
9
50
11
7
21
59
1.56
39820--39850
15
2.1
15
100
0
62
61
6
12
19
1.53

Tables:   1

The End!